Array 1 109977-108361 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABR01000034.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2947_R1 NODE_2_length_359676_cov_1.10224_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109976 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 109915 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109854 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 109793 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109732 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109671 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109610 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109549 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 109488 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 109427 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 109366 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 109305 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 109244 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 109183 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 109122 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 109061 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 109000 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108939 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108878 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108817 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108756 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108695 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108634 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108573 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108512 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108451 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108390 29 100.0 0 ............................. | A [108363] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127832-126646 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABR01000034.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2947_R1 NODE_2_length_359676_cov_1.10224_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127831 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 127770 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 127709 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 127648 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 127587 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 127526 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 127465 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 127404 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 127343 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 127282 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 127221 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 127160 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 127099 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 127038 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 126977 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 126916 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 126855 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 126794 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 126733 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 126673 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //