Array 1 68343-68776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWQ010000001.1 Streptococcus thermophilus strain CF4_14 NODE_1_length_158655_cov_140.876028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 68343 36 100.0 30 .................................... GGTGAAAAAGGTTCACTGTACGAGTACTTA 68409 36 100.0 30 .................................... TCAATGAGTGGTATCCAAGACGAAAACTTA 68475 36 100.0 30 .................................... CCTTGTCGTGGCTCTCCATACGCCCATATA 68541 36 100.0 30 .................................... TGTTTGGGAAACCGCAGTAGCCATGATTAA 68607 36 100.0 32 .................................... ACAGAGTACAATATTGTCCTCATTGGAGACAC 68675 36 100.0 30 .................................... ATAGTATTAATTTCATTGAAAAATAATTGT 68741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 7 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22915-23167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWQ010000002.1 Streptococcus thermophilus strain CF4_14 NODE_2_length_104443_cov_144.175039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 22915 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 22987 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 23063 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 23138 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 27802-28894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWQ010000005.1 Streptococcus thermophilus strain CF4_14 NODE_5_length_75051_cov_136.484653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27802 36 100.0 29 .................................... ATGATGATGAAGTATCGTCATCTACTAAC 27867 36 100.0 30 .................................... CTTCACCTCAAATCTTAGAGCTGGACTAAA 27933 36 100.0 30 .................................... ATGTCTGAAAAATAACCGACCATCATTACT 27999 36 100.0 30 .................................... GAAGCTCATCATGTTAAGGCTAAAACCTAT 28065 36 100.0 30 .................................... TAGTCTAAATAGATTTCTTGCACCATTGTA 28131 36 100.0 30 .................................... ATTCGTGAAAAAATATCGTGAAATAGGCAA 28197 36 100.0 30 .................................... TCTAGGCTCATCTAAAGATAAATCAGTAGC 28263 36 100.0 31 .................................... TAAAAACATGGGGCGGCGGTAATAGTGTAAG 28330 36 100.0 30 .................................... ACAACCAGCAAAGAGAGCGCCGACAACATT 28396 36 100.0 30 .................................... TATAACACAGGTTTAGAGGATGTTATACTT 28462 36 100.0 31 .................................... CTAGAAGCTCAAGCGGTAAAAGTTGATGGCG 28529 36 100.0 30 .................................... CTTTGAGGGCAAGCCCTCGCCGTTCCATTT 28595 36 100.0 30 .................................... AACTACCAAGCAAATCAGCAATCAATAAGT 28661 36 100.0 30 .................................... CTATAAGTGACAATCAGCGTAGGGAATACG 28727 36 100.0 30 .................................... ATCAGTGCGGTATATTTACCCTAGACGCTA 28793 36 100.0 30 .................................... AACAGTTACTATTAATCACGATTCCAACGG 28859 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //