Array 1 461148-462700 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYI01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-4763 NODE_3_length_725706_cov_93.580429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461148 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461209 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461270 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461331 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461392 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461453 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461514 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461575 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461636 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461697 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461758 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461819 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461880 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461941 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 462002 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462063 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462124 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462185 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462246 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462307 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462368 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462429 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462490 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462551 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462612 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462673 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479015-479532 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYI01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-4763 NODE_3_length_725706_cov_93.580429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479015 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479076 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479137 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479198 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479259 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479320 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479381 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479442 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479503 29 93.1 0 ............TC............... | A [479530] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //