Array 1 43295-42138 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEDD01000019.1 Streptococcus suis strain LS0E, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43294 36 100.0 30 .................................... GTTCGACTATTAAAGTCGATAAAGGACGTC 43228 36 100.0 30 .................................... TGTTGATGATATATATAGCTATCATGGTTT 43162 36 100.0 30 .................................... TGGCTATGGAACTGAAGATAGCTAAATTAC 43096 36 100.0 30 .................................... CAGTCCAAGCCTTAGAAATTGCTCCAGGAA 43030 36 100.0 30 .................................... GCTTAAAGTAAAAGATATGCTTGCCACCGC 42964 36 100.0 30 .................................... TGCGTGTCGCGTGAGAAGGTTGAATACTGC 42898 36 100.0 30 .................................... TAATGCAACTACTAATAATGGTTGGACTTT 42832 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 42766 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 42700 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 42634 36 100.0 30 .................................... CTGCAATTCGTTCATAACGCCACTGCGAGG 42568 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG 42503 36 100.0 30 .................................... AGTGCCAGAAAAAGAGTACGCTCTCTACAA 42437 36 100.0 30 .................................... GCCAGCTGTGCGCGTGGCATCATAATCTAG 42371 36 100.0 30 .................................... CGAAGGCATGGCCTTGATTTATCAAAGATT 42305 36 100.0 30 .................................... AGGTGTGTAGAAAATTCTGCTGAAATAACT 42239 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 42173 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTCGTGACGGACGGGATGATTGTTGGGCTGGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //