Array 1 115-1116 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLB01000662.1 Salmonella enterica strain BCW_5091 NODE_662_length_1170_cov_4.23758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115 29 100.0 32 ............................. GAACGGACGGTGAAAAATACCTGGTAAGTCGC 176 29 100.0 32 ............................. CATAGCGTCCTACACCATATTTATCCGGGTAT 237 29 100.0 32 ............................. GATTGCTCATGCTGTTTTTCCCTGGTTTATTT 298 29 100.0 32 ............................. GATCCCAAACTGGTCAAGCTGGCGATTATCAA 359 29 100.0 30 ............................. CTGGATTGATGGGGGGGTTATTTATTGCGG 418 29 100.0 32 ............................. AGTGGTACGTTGTTATTCATATTGCCTTTCAT 479 29 100.0 32 ............................. CACCACCTGGTGCAAATGATTCACCACCTGAT 540 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 601 29 100.0 32 ............................. ATTATAATTTCAACAAAACTAAAACAATATCA 662 29 100.0 32 ............................. TCTTTTTGAGCCGGGGTAACTTTCTCCCAGTC 723 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 784 29 100.0 32 ............................. ACGGTGTGCCGCCTTTGACCTTCGGGGGTTTT 845 29 100.0 32 ............................. ATTTCGTGAATACGCGGATCGTTTTCACAGCT 906 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 967 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 1028 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1089 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 115-1423 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLB01000602.1 Salmonella enterica strain BCW_5091 NODE_602_length_1477_cov_5.92786, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 176 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 237 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 298 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 359 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 420 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 481 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 542 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 603 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 664 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 725 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 786 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 847 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 908 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 969 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 1030 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 1091 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 1152 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 1213 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 1274 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 1335 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 1396 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 926-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLB01000702.1 Salmonella enterica strain BCW_5091 NODE_702_length_975_cov_4.21382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 925 29 100.0 32 ............................. CTGCTGTAGCGGTCCTGGCGGGGCTTATCCCC 864 29 100.0 32 ............................. CTAAATATTCACCCTCATCGTCGATAACCCCA 803 29 100.0 32 ............................. TTGATGGTGCCGTTGTCGCATTCCGTGATTTT 742 29 100.0 32 ............................. TCTATAGCCTCTTTCTGCTTCATCCATGTACA 681 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 620 29 100.0 32 ............................. CGGCACCCAGTGCGGCCAGAATCCCGATCAAC 559 29 100.0 32 ............................. CTGGTGGAACGATGGCGGCGAATGGAGAGAAA 498 29 100.0 32 ............................. GTATTCAGCTCTTGCCGCAATATGCCGCTCAA 437 29 100.0 32 ............................. ACAAACACACAGTTTGTTGATAACAAAACAGG 376 29 100.0 32 ............................. GGTATCTATATCTCGCGTGATGATCTGCTCGC 315 29 96.6 32 ................T............ TTGCCGCGATACGCCATAAACGCGACTCCGTC 254 29 100.0 32 ............................. AAATCACAAAGCGCCCAGGGGGAGCAAATAAC 193 29 100.0 32 ............................. GCGGTGTAACAGTTTGCGAGTTCGCCGCCCAG 132 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : GGTCTTATAAATTGGGCTGATAGTGCCGCTGATGTGTTCCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 593-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLB01000814.1 Salmonella enterica strain BCW_5091 NODE_814_length_642_cov_6.69775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 592 29 100.0 32 ............................. GCGGGACCTCCAGCGCCACTGCTAATATTCGT 531 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 470 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 409 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 348 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 287 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 226 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 165 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 104 29 93.1 0 A...........T................ | A [77] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-671 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLB01000778.1 Salmonella enterica strain BCW_5091 NODE_778_length_745_cov_4.19355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 93 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 154 29 100.0 32 ............................. GTTACAGTATCATGTAAAACTGTATAAAAACA 215 29 100.0 32 ............................. ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA 276 29 100.0 32 ............................. TTGAAATCTATCGCCGGTCGTCGCCACGTTAC 337 29 100.0 32 ............................. ACAACGATAAATTTGTGCAGGGGCTATATAAC 398 29 100.0 32 ............................. ACAGGGTATATGAGCTTATACGTCATGAACCA 459 29 100.0 32 ............................. TTTGCATAGCGACTGTAAATTACTGAGTGAGT 520 29 100.0 32 ............................. AATTATCGGTATACGTATTTGCATCAATCAAT 581 29 100.0 32 ............................. CCTCAGCGCCAGCGGGAGCCGTGCGCTGGGTT 642 29 96.6 0 ..C.......................... | A [669] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTTATAAATTGGGCTGATAGTGCCGCTGATG # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //