Array 1 25586-26215 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYM01000017.1 Lacticaseibacillus paracasei strain 5b Contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25586 36 100.0 30 .................................... TATCAGAGGCTTATCCATTAAACAACTGGC 25652 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 25718 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 25784 36 100.0 30 .................................... TCGTAGCGGCTAACACGCTTATGGCTGACA 25850 36 100.0 30 .................................... AAAATATTTCTAGAATTAGCAACTTTATGG 25916 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 25982 36 100.0 30 .................................... GGCCAATATCATCAGTCGGGAGATTGTCGC 26048 36 97.2 30 ..................................T. ACTCGTCAATATCCTTCTGCATGATCAAGT 26114 36 100.0 30 .................................... TATTATCCTAACACATCCATCGAGAAGTTA 26180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : TGAATATTCTAATGTTGTTGGATTGAAGTCAATATTTGAGACAGATTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 74412-74046 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYM01000077.1 Lacticaseibacillus paracasei strain 5b Contig77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74411 36 100.0 30 .................................... TGCCAATCACTGGTCGCCCCCTTCTTTTTG 74345 36 100.0 30 .................................... TGATTTAGATAATGAGATACAAAAATTTAT 74279 36 100.0 30 .................................... GACCAAAGCATTGCAAGATCTGTCTGATGA 74213 36 100.0 30 .................................... CAAAAACAGATTTGATCGCTTCGCCAAAAT 74147 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 74081 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AAGAGCCGCAGCAGGCATGAGCATCGTGCGTGAGA # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 727-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYM01000078.1 Lacticaseibacillus paracasei strain 5b Contig78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 726 36 91.7 30 TC.A................................ TATGATACTTTTCAGTTGTTGATCAACGGC 660 36 100.0 30 .................................... TAACGTTTGTATAAATTGTGATAATTCTTC 594 36 100.0 30 .................................... CTCATCGGTCCTAGCTTTTGACAATCTCTT 528 36 100.0 30 .................................... CTACTTCAAAGTGAAGCCCCCCTACCAAAA 462 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 396 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 330 36 100.0 30 .................................... AAAAGAAAAGAGGAACAAGCGCATGGCATA 264 36 100.0 30 .................................... TTGTAGTCAGCGTCATCATCATACCATGGG 198 36 100.0 30 .................................... ACAGCATTGACCACATTCAAAAGCAAGACA 132 36 100.0 30 .................................... TTGACGGGGTCGAATTGCCAGAACCGTTTT 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.2 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : CTTCCTTTTGAGAGACGATTTATTCATTATACCCTCTCTTAAAAGTTGTCTCAGGAATCAGCTTAC # Right flank : CCCTTGTACACTTGCATGCCGTTTTCTACGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //