Array 1 327397-326880 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFXB01000004.1 Streptomyces sp. NWU49 Contig_131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 327396 29 100.0 32 ............................. GCGCCAGCGGTGCGATATTCACGCCGGAAATG 327335 29 100.0 32 ............................. GCGAGGGCCTGCTCGACCGGATTCAGAGGAAC 327274 29 100.0 32 ............................. ACCCTGGCCGTCGTGGGCGGCGGCTGGTCCCA 327213 29 100.0 32 ............................. TGGCGCAGCGGCGTGCGGAGCCACCAGCACGG 327152 29 96.6 32 ..........T.................. TTATACAACCGGAAGTGGAAGAGGGCGGTGGA 327091 29 100.0 32 ............................. GGCCTTGCTGTTTGGTGACCTTGGAGGGGCTG 327030 29 93.1 32 ......................C...T.. GGACGGTGCGCCCCGAACGGGCTGGCCACCTC 326969 29 100.0 32 ............................. AACTGCGGCATCTCCTTCGGCAAGGAGTCGGA 326908 29 79.3 0 ............T........G..T.GTG | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGTTCTCCCGAGCCAGGCGCAGGACGAGAGCCTGGATAGAGCGGCGGGTGGGCGGTCTGCCGGGACGCTTGCGTCGGGAGACATCGGCGTGGCGACGGCGCATGAGGTCGCGGTGCCACCTCAGGATCGTCGCAGGGGAGACGATCAGGTGGAGCTGCCGCTGCCGGGCGCGAGGCAACCGGTGGAGGAGTGCGGCAAGGAGAGCACGGTCCGCCGGGGTGGCCCGGGGCCTGTCGATCTGCCGCTGCAGGACCGCCAGTTGGTGGCGCAGCGTCAATGTCTCGATGTCCTTGTCGACATCGCTCATCGGCAGCAGCCGGATGAAGGCGAACACGCTCGACACGGCGAGGTAGGGCAGTCGCAGCAGCACGATTGGTCAGCCTGACACACCCGTCCTGCGGCCAACGGCGGTTCACGAGAACCTGCACGTCGCAGGCCATGGACGGGGTTTTCGGCACCCGCAGGTCCCACCACCTACGAGCGGCCCGCCCCCAGCCGGC # Right flank : CAGTTGGCGGGCGTGCGTTGCGCAGCTGGTGGTCTTGCCGGGGGTGTGGCTGCGCAATTGCTGCGCGTTCGGCTGCGCGATGGCCTGCGCYGTGCTGTGGCCTGCGGTGGTGGGGTCCGTGGTCGAGGGCTGCGTGAGGCCTGGCCACGATCCTGACCACGGCTCTGACGGTGGTGGTCAGGGGTGCCGGGTGTATGCATTTCGGTGCCGCRGGTGCGTAATGGACTGGTGGCTGCGCAGCCCGCCGTCTTGGTCTGRGCYGTGTGCTGACCTGTGTGGTTGGGGTCATGGGCGGTTCGTGGTCGGGGCGGGGCTGCTCCTGTGGTGGGGCGGTGGCGTGTGGCCTTGCCAGGTCTTGTCCGTCACCGCCTCGCCGTGTTCCCGCCGGCGCCCGGACGTCTGCCACCTTGTCCAGCCGTCCGTCCTGCTATCCCGCCTCGTGCTCCTCGTACCTGTGTGGGGCGGCGGCATGGTGCCCCACCGCCCACCGGGCTTCCCCT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6706-2344 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFXB01000060.1 Streptomyces sp. NWU49 Contig_123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6705 29 100.0 32 ............................. CCGGCCGGAGATCCGGCTGGCTCTTGAATGCC 6644 29 100.0 32 ............................. GCCAGTTGGACTCGCCGTCCCAGAGCTTTTTC 6583 29 100.0 32 ............................. TCCATCCCGCCGTCGGCGGCTTCCCCGGACCC 6522 29 100.0 32 ............................. CGCCCGCTGACCGGGCCGCCGACGCTGGCCGC 6461 29 100.0 32 ............................. TCCTTACGGTCAGCGTGGACATCTCCTTGTCC 6400 29 100.0 32 ............................. GGGCCGCATCCTGCGCGACCTTCTGTGAGGCA 6339 29 100.0 32 ............................. CCCACCCACATCCCGGCAGCCGGCCCCGTCTT 6278 29 100.0 32 ............................. TACGTCGACATCGTCCAGACGGTCATCAGCGA 6217 29 100.0 32 ............................. GACGAGTGGTACGCGGCGCACCCTGACGATGC 6156 29 100.0 32 ............................. TCTGTTGTTTCTTTCCCAAGGTGTTCGCTTTT 6095 29 100.0 32 ............................. CGGATTCATCCGGGCCGCCGTCACGGCCAACC 6034 29 100.0 32 ............................. TCGAGGGCGGGCGCCTTCCCGTCCTGTGTCTT 5973 29 100.0 32 ............................. CACACCAGCCGCACGCGAGCCGGGGGAACGTC 5912 29 100.0 32 ............................. CGGATACGCGGCCGTCTGGCGGCCCCGGGAAC 5851 29 100.0 32 ............................. GACGAGCCGCGTCCGCACCGCCTGAATCTCCG 5790 29 100.0 32 ............................. TCGGCCTTCCAGCGGCCGTAGTGGAGCTCGCA 5729 29 100.0 32 ............................. CACTTCTCCAGGGCCTCCTCCGCCTCCGGCCC 5668 29 100.0 32 ............................. GACGAGCCGCGTCCGCACCGCCTGAATCTCCG 5607 29 100.0 32 ............................. TCGGCCTTCCAGCGGCCGTAGTGGAGCTCGCA 5546 29 100.0 32 ............................. CACTTCTCCAGGGCCTCCTCCGCCTCCGGCCC 5485 29 100.0 32 ............................. GGCGAAGTGAACCGGTACCGAGGAATCCGGGA 5424 29 100.0 32 ............................. CAGGTGGTGGGCGTGGGCGTCCTCCAGCTCCC 5363 29 100.0 32 ............................. CTCGAGCATGCCGACGCCCACGCCGGAGCCCG 5302 29 100.0 32 ............................. GCCTCGGCTTTCTTCTTCGCTCCCTCGCCGGA 5241 29 100.0 32 ............................. AAGGTCGCGGGTGCCTTTGGGGCGCCGAAGTT 5180 29 100.0 32 ............................. CGGGAATGACCACCTACGTGGACACGAACGCG 5119 29 96.6 32 .....................G....... AAGGGAATTGTTGCGGTTTGGAACAAGACCGC 5058 29 100.0 32 ............................. GTTCCCACGAATGTCCGGGGTCCGTCGAGTTT 4997 29 100.0 32 ............................. GGCCCAGGGTTCGCGGCCCCGGGCCGTCCGTC 4936 29 100.0 32 ............................. TCCGCCATCGACCGGGAGGAGACCGCGGAGAA 4875 29 100.0 32 ............................. ATGTTCTTCCTGCTGCCGCCCAACCGGCGCCA 4814 29 100.0 32 ............................. GTCGTCCGCAACAGCGAGGCGGTCGTCCTGGA 4753 29 100.0 32 ............................. CTGACTCTCTTCTCTAAGCCAGGTAAGGGAAG 4692 29 100.0 32 ............................. GGAGGCGTCCGGTGAAAGAAGAGCACGAACTT 4631 29 100.0 32 ............................. GGCCCAGGGTTCGCGGCCCCGGGCCGTCCGTC 4570 29 100.0 32 ............................. CCGCCCGCTGGAGCCGGGCGGGGTGAGCTTCG 4509 29 100.0 32 ............................. GACGGGACTCGTCCTTGGTGTGACGAGGCACG 4448 29 100.0 32 ............................. AGTTCGGCCTGCGCGTCGGGGTGCTCCGCGGC 4387 29 100.0 32 ............................. CCGTCCGCGACCACCGAACCCAGCGTCACACC 4326 29 100.0 32 ............................. CAGACCTTGCTGATGGCACCTGCGATGCCGGC 4265 29 100.0 32 ............................. CGGTGCGAGATATGTAAGCGGACCCCGGAAGA 4204 29 100.0 32 ............................. AGCGTTTCAGGCGAGGGGTTCGCAGCAGGACC 4143 29 96.6 32 .....T....................... CACGACAAACGCCTCACCGCCCGCACCTACAG 4082 29 100.0 32 ............................. ACCCCCCGCACCCGATCCGCGGCCACCACCTG 4021 29 100.0 32 ............................. CTCGTCGCCATCGGCGGCCGGCGCTGGCAGAA 3960 29 100.0 32 ............................. TGTCGCCTGGTCCTCGGGCCGCCCGGCCCGGC 3899 29 100.0 32 ............................. AGCTCCAGGCGCAGGTCGAGCGGAGTCTCAGG 3838 29 100.0 32 ............................. GCGCGATCGCCAGGAAGGCTGTCCCGGAACTC 3777 29 100.0 32 ............................. TCACTGAACCCAAATCGGCGACATTGGGCAAA 3716 29 100.0 32 ............................. GAGGTCGACACGGTCCGCGCCCGCTACGGTCT 3655 29 100.0 32 ............................. TCGAGCGCGCCGGCGATCGCGAGGACGTCGTC 3594 29 100.0 32 ............................. CGAGCCCGGCAGACCAGCAGTAGGTACGGGAG 3533 29 100.0 32 ............................. TGGCACGCCTCCGTCTCGCACTCGGCGCCGTC 3472 29 100.0 32 ............................. CCTGATCACGGCCGAGACGAAGCAGTCTCTCA 3411 29 100.0 32 ............................. ACGTCGGGCCCGTCGCAGGGAACGGTGCCGGA 3350 29 100.0 32 ............................. CGCTTCGAGGCAAAGGGGCCGTTGGCCTTCCA 3289 29 100.0 32 ............................. GAGGAGACCGCCGCCGAGCGTGAGGGGGACCT 3228 29 100.0 32 ............................. ACGCACCACCCACGAAAGGGGCCGTTCAGCCT 3167 29 100.0 32 ............................. GGCTGGGAAGACATCGGGACAAATCCCGAAGG 3106 29 96.6 32 ...................A......... TCGTCCAGTAGGCCGGTACAGGACCGGTGGAT 3045 29 100.0 33 ............................. ACGGGGGTGTCCTCCTGGTCATGTGGTCATGCG 2983 29 96.6 32 .............T............... GACAGGAGCAGCCAGCCATGAGTCGACGGCAC 2922 29 96.6 32 ..............T.............. TGGTAGGTGACGGCCCATGGGTGGTCGGGGGT 2861 29 100.0 32 ............................. GCGAGGGCCTGCTCGACCGGATTCAGAGGAAC 2800 29 100.0 32 ............................. GCGAGGGCCTGCTCGACCGGATTCAGAGGAAC 2739 29 100.0 33 ............................. GCCTTGGCCCGGCGCGGGCGGATGAGATGCGGC 2677 29 100.0 32 ............................. CGCGGCCGCGGCCCGTGGAACCCGCCGTCGGC 2616 29 100.0 32 ............................. TCCCCTTTGAGGGACCGCTCCTGTGAAGGACG 2555 29 96.6 32 ..........T.................. TTATACAACCGGAAGTGGAAGAGGGCGGTGGA 2494 29 93.1 32 ......................C...T.. GGACGGTGCGCCCCGAACGGGCTGGCCACCTC 2433 29 100.0 32 ............................. AACTACGGCATCTCCTTCGGCAAGGAGGCGGA 2372 29 79.3 0 ..........T.T........G..T..TG | ========== ====== ====== ====== ============================= ================================= ================== 72 29 99.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCATCAACCACGACGGACCCGAGGACTACGGAGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGACTGCGCGGCTTCCTCACCCGCTGGCTGCTGGAGATTTCCGCCGGCGTGTTCGTGGGCAACCCCTCGGCCCGCATCCGCGACGTGCTCTGGGAAGAGGTCCGGCAGTACGCGGGACAGGGCCGCGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGATCACGAGGGCGTCACCCTGATCCGCCGCCCCGACCCGAACGCATCCGCTCCCGGCCCGACTGCCCGGAACGGGCCACCATCCGGCTGGAGCCGGGCTGCCAAACGCCGACGCTTCGGGAGGGGCTGATGCACATCGAGCACCTTATGCCTCATTTGCCGGAATCAAAGAAAGTGCTCGGAAACCGCCTTCGGCTCCAGTAAAGCTGCAGGTCATCCAGT # Right flank : CAGTTGGCGGGCGCGCGTTGCGCAGTTGGTGGTCTTGCCGGGGGTGTGGCTGCGCAATTGCTGCGCGTTCGGCTGCGCGATGGCCTGCGCGGTGCTGTGGCCTGCGGTGGGTGGGGTCCGTGGTCGGGGTTCTGGTGTCCGTGGTCGAGGGCTGCGTGACGCCTGGCCACGGTCCTGGCCATGGCTCTGACGGTGGTGGTCAGGGGTGCCGGGTGTATGCATTTCGGTGCGCTGGTGCGCAATGGGCTGGGGGCTGCGCAGCCCGCCGTCCTGGTGTGCGCGGTGTGCTGGTCTGCGTGGTGGGGTTCGTGGTCGGGGCGGGGCTGCTTCTACGGCGGGGCGGTGGCGTGTGGCCTTCCCAGGTCTTGTCCGTCACCGCCTCGCCGTGTTCCCGTCGGCGCCCGGACGTCTGCCACCTTGTCCAGCCGTCCGTCCTGCTATCCCGCCTCGTGCTCCTCGTACCTGTGTGGGGCGGCGGCATGGTGCCCCACCGCCCACAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16429-18654 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFXB01000060.1 Streptomyces sp. NWU49 Contig_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16429 29 100.0 32 ............................. CGGGGCGGCAACCACCACAAAACAGGCGGGCC 16490 29 96.6 32 ...A......................... AGGCTCCTGCTTGGCTGCGCTGGCCGGGGCCC 16551 29 100.0 32 ............................. GTTGCTCATGCCCAGAGTACGAGAGACCGGCG 16612 29 100.0 32 ............................. GACACGTGACGTTGTTCCCCGCGCAAGTTCAG 16673 29 100.0 32 ............................. GCTGGTGGGCGCACGATCAGGTGTCTGTACCA 16734 29 100.0 32 ............................. ACGGGGTGCGGGAAGCTGAACACGCGAGGGTC 16795 29 100.0 32 ............................. TTCAAGCGTAAGGTCATGCGCGCGATCGAGAT 16856 29 100.0 32 ............................. GTCGCCGAATGGGCAGGCATCATCGGAGCCGC 16917 28 89.7 31 ........-...............A...T CGAACGTCCTGAGCCGGACCCTGTACGGTCA 16976 29 93.1 32 ....................A.......T TTCCGTCCTTGAGCTGCTCGACTTCGAAGCCG 17037 29 93.1 32 .........A..................T CCGAGTGCCATGATGGCGCTCTCCTGTCTCGT G [17054] 17099 29 93.1 32 ..............T..A........... GTGGCGGCCATGATGTGGACGACGACGCCCCG 17160 29 96.6 32 .................A........... GGAACGTCGGAATGCGGGGGTCGAGGTCGGTC 17221 29 100.0 32 ............................. GCGCGCTTCCGCGCGTCCAGCACCGCCCGGTG 17282 29 100.0 32 ............................. TGCCGCCGCCGGAACCGGCCGGTCGGCAGCCA 17343 29 100.0 32 ............................. CGTGGGTAAGCGCACCTCAACCCGGGTACGAC 17404 29 100.0 32 ............................. TCCCCCGAGCACGCCGCTCGCGTCGCCGAGCT 17465 29 100.0 32 ............................. CCGGCGCCGAAGCACACCTTCGCCGAGCCGAG 17526 29 100.0 32 ............................. CTACTGGGGCGGCCCTTACGGGCGACGGCCTC 17587 29 100.0 32 ............................. GGGGAGGGATTCCATTTCGTCAGTTGACGAAA 17648 29 96.6 32 ............................G GAGCAGCGGGTGCCGGGGCGTCGTTCTGGCCG 17709 29 96.6 33 ............................A CAGCGGGCGTCTGCGTCGGGTCGATCAGGTCGA 17771 29 100.0 32 ............................. CGCAGGATGGCTCTCCGGACCCCGGAGAACCT 17832 29 100.0 32 ............................. TTGAAGTGCTTGACGTGGTCGGAGTCGTTCTC 17893 29 100.0 32 ............................. TGGTCCAGCTCGCGGCGTACCCGGGCCACGTC 17954 29 96.6 32 .......T..................... ACGGCCGGCGACTTGGTCAGCAGGGCCACCAG 18015 29 100.0 32 ............................. ACCGGTGGATCAGCCGAAGGGGACGGCGTGTA 18076 29 100.0 32 ............................. AGGTGTTCGTATCGGTTCGACAGCCGGTCCGT 18137 29 100.0 33 ............................. GGCCGCTGACAGCCCGCCAGTCATGGCGCCCGG 18199 29 100.0 32 ............................. ACCGCGGCGCTCACCGGTGACCCGTCGCCGGC 18260 29 100.0 32 ............................. GGCTGGCACACGCACGCGCACGTCCTGCTCTG 18321 29 100.0 32 ............................. AGTTACTGCCGTCAAAGTCGCCCTTGATCACG 18382 29 96.6 32 ................A............ GCAGGGACCGACTCCGGCACGTCCACGGGATC 18443 29 96.6 32 .................A........... GAGGGCGACGTGCCCGGGGGGACGATGGACGT 18504 29 100.0 32 ............................. AAGCCGGGCCCTGGGGGACCCCAGACCGGCAT 18565 29 100.0 32 ............................. GACTCGTAGACGGCGTTCTTGCCGACCAGCTC 18626 29 93.1 0 ...T........................A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AACGCGGGAGTGGCCTTGCCGATGTCGTGCACACCCGCGAGCCACACCGCGAGGGCGCGTGCATCCGCCTCGCCCCGCGGCAGCGCCTCGGCCACCAGCCTCCGCACCCCTACCGGCAGCCACCGGTCCCACAACAGGCCGGCCACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAGCCATCGGTGCCACGGTCATGCTTGGCCCACACCGACCGAGCCGGCTCCCCCAGCCGACGCAACAGATCGGAACGAGGGCTCCCCCCATCGCTCATGGGTGATTGATACAGGAACAGCCCCGCTCAGCACACCAAAACAAGCAAACAGAAGCATCTGCAGGAAGCCGACGCCCTCAAGACGTACGATGACCGGCCCGCTCCCGATCCAACGAAAAGCACCTACAAAACCCAATGAACCGAATACTCCATTTGCCGGAATCTGCGAAAGCTGCTGAGAACACGTCTCTGCGGCAATAAACCCGCAGGTCAGCCAGT # Right flank : ACCGCGCCGAGGCGTCCACGGCCCGTGTGGGCGGTGACTGGTACAAGACCCGCGTGCTGCCCACGGGGCAGGTGCTGATCGCGCTCGGCGACGCCCGCGGTCACGGGCTGGACGCCGTCACGCTGATGGCGAAGCTGCGGTACGCCCTGGCGGGCCTGGCGTTCACCGGTGAGCCGGTGGAGCGGCTGACCGCCTGGCTCAACTCGGTGGCCTGCGACGACGGCGACGAGTCCACCGCCACGGCGGTCATCGCCCACTACCACCCCGACCACGGCCTGCTGCGCTGGACCTGCGCTGGTCACCCGCCGCCCGTCCTGGTCCGCGGCCGGCGGGCGTGCCCGCTCGATCCGCCGGGCGGTCCCGGTCTCCCCCTGGGCGTCCTGACCGGCGAGAGCTACGTGGCGGCCGAGACCTCCCTGGACCCCGGCGACGTGGTGCTGCTCTACTCCGACGGCCTGATCGAGCGCCGCGGCTCGGATCCCGACCGGGACCTGGCACGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2117-398 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFXB01000054.1 Streptomyces sp. NWU49 Contig_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2116 37 94.6 36 .....................AG.............. CCGCCGGGCCCGTACCGGTGGCACGGATGCTGGCAC 2043 37 94.6 35 ................A.....G.............. AGCGGGATCGCCTCGCTGATCGGGGGCAGCTCGCC 1971 37 97.3 34 ......................G.............. ACGTGGCTCGACGCGATGGTGCCTGCCATCGGCC 1900 37 97.3 34 ......................G.............. ACGTGGCTCGACGCGATGGTGCCTGCCATCGGCC 1829 37 97.3 38 ..................A.................. TGGTGGAGGCGTCGCACGCGAATGCGGTCGCCGACCGC 1754 37 100.0 35 ..................................... ACCGAGATCGCCTACGCCCCGACCAGCACCCGGGC 1682 37 100.0 37 ..................................... ACTGCCCTGTCCCGCGTCCAGCAGCGCACCGGGCACC 1608 37 100.0 38 ..................................... CTCACCGACGGCTCGCGCCTGCGCATCGCCATGTCCGA 1533 37 100.0 36 ..................................... CACGGCGAGTACTCGGACTGGCCGACCCGCGGCGGG 1460 37 100.0 35 ..................................... ACCGACTCCGCCGGGCGTACCTGGGCCATCAATGG 1388 37 100.0 35 ..................................... GCCCTGGAGCTATGGGCGGAGGTGCTGGGCGAGGC 1316 37 89.2 35 .........C........AA..G.............. ACCGCCAACGGCGCGGCTAACCTCATCAAGGTGAG 1244 37 91.9 37 ......A........T............A........ CGGATCCGGGACACCAAGGGCAAGAACGTCATCATCA 1170 37 94.6 36 ..........T...........G.............. GTCAGTGCGATCGGCGTCTGCGACTCGCGGCTGATC 1097 37 94.6 37 ......................G.....A........ CGCCAGTACCACGGCGGCGCCGCGCTCTCCTGGTCCC 1023 37 91.9 39 ............T......A...........T..... CACTGCGGGGTGATGGTCAGGGACTGGCCCGGCGTCACC 947 35 86.5 35 --................A...G.....A........ CAGCTGCGGAACGGCATCGACGGCCCAGTCGTCGC 877 37 91.9 36 .......C..T.....................A.... CCCCCTCGGGAATCCCGTACTTGTCCGGCACCCCGC 804 37 97.3 37 ...................A................. ACCCGCAAGGCCGGCTCCGGCGTCAACACCAAGCGCC 730 37 83.8 35 .....A...A....T..A..T......A......... GCCGTGTCGTGGAGCGCGCTCCGGGACGTGGCCAC 658 37 91.9 39 ................A...T.......C........ GTCTACCGGGCGAACAACGACGTCGACCTGATCCACCGG 582 37 91.9 37 ......................G.T.......A.... ATCGAGAAGACGTTCAGCCGCGGCGGAGTCCTCACCC 508 37 94.6 36 ..A.............T.................... GAACTGCGCGACGCCAACGGGTCCCGCGCGGCCGGT 435 37 91.9 0 ...............A...AT................ | C [410] ========== ====== ====== ====== ===================================== ======================================= ================== 24 37 94.7 36 CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : TCCCCCTCCCCCCGCGCGCCTCGACCGCCCTGAGTCCGTCCTGCCAGGCACACGCCCCCTTGCCCACGTCGTGCACCAGGGCCAGATACTCCGCCAACTCCCCGGCCCCGAACACCTCCCCGAAACGCCGCGCCAGCGCGGCCGAGCCACGCAAATGGTCCTCCAGCCGGTGCCGCACCCCCGCAACACCACTCAGGCTGTGCGCATACAACACGCCCCCCACACCTGCCACTTTCTCCCCCTCCGCGCCGGGCGGCGCCCTCCCGCACCGCACCGAGGCCAGAACCGTAGCCGCCCCCTCGGACATCGGCCGGCCCGAGTCCCGAACCAGCAGGCCCCAGAATCCGTGGCCCGCACCGGGAACGCCGTGCTTCAAAACCTCACGTGGACACACGACACGCGGATCACACCGCAGCCGAATGTCCGTATTCAACAACTCTGTTCCTCGCTGCCCGCCCACACGGCAGCGAGCGATACGCTGTTCCGGCTGCTCAGGCAGC # Right flank : CTACGCAGACCTGCCGCACTGGCAGGACTACGTGGACATGGCGGTCGCCCTGTCCCGTCCGAAAATACGATTCGATGCAGTGAGCTGTGGAGATGTCGCTCGGTCAGGCGGCGCGATGATACTGGTTGATCAATCCTCCGAGGATGGATTCTCGTCGGATCCGGTGGTTCTGGAGATCGGCGACGATGGCCGGGGCGGGTGGTTCGGTGCTATCGGGGGATAGTTGCTGTCGGGACTGGTGCGGCCGGTGCTGGTTGTAGTGCTGGATGTKCTCGGTCAGCACCTTRACGGKATGGGCCTCGTTGTAGATCAGCACGCGGTCGAGGACCTCGCGGCGCAGGGTGCCCACGGCTCTCTCGCAGATCGCGTTCGCTTTGGGTGCCCGCGGTGCACRGAGC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11062-12857 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFXB01000054.1 Streptomyces sp. NWU49 Contig_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11062 37 100.0 36 ..................................... ATGCCGAGGTAGGCGGCGACGTCCTCGCCGACGGTG 11135 37 100.0 36 ..................................... GCCTTGCCGTCCTCTTCGTACTCGGTGATGGCGGTG 11208 37 100.0 35 ..................................... TTCGAGGGCGGGTCGGACCAGTGGGCCGACCCCAT 11280 37 100.0 38 ..................................... CCGCCATGCCGTCGGGGCGACGGTGATGAAGAACTGCG 11355 37 100.0 37 ..................................... GTCTGCTGGGTGATGTAGTGGATGCCGGCGCCGACCG 11429 37 100.0 37 ..................................... GTCTGCTGGGTGATGTAGTGGATGCCGGCGCCGACCG 11503 37 100.0 35 ..................................... TACTACGCCGAGTCCCTGCCCAACCGGTACATCGA 11575 37 100.0 37 ..................................... ACGCCGTCCACCATGTGCTCGGGGACGCTCAGCACGA 11649 37 100.0 37 ..................................... CTGCTGGTCTGGGATCCGGAGTCGGCGTCGAAGACGA 11723 37 100.0 34 ..................................... TCCCGGTGGACCTCCCAGACCTGCTCGGTGCTGA 11794 37 100.0 38 ..................................... TCCTCGATCACGGTCAGACCGGCCGCCCGCAGTACCTG 11869 37 100.0 35 ..................................... CGCAACCCCGTGCGGTCGATTCCGGCATCCCGGAT 11941 37 100.0 35 ..................................... TTGGAGTCGATGTCGTAGGCGTACGACAGCAGGTG 12013 37 100.0 35 ..................................... GCCGAGAAGCGGCTCCACATGGACAACCCCTGGCA 12085 37 100.0 36 ..................................... TCCAGCGCGATCTTCGCAGCCAGCGTCAGCGGCGAC 12158 37 100.0 37 ..................................... ACGTTCCCCCTCAGCGAAGGCGCGTTCCACCGCGGCG 12232 37 100.0 37 ..................................... ACGTTCCCCCTCAGCGAAGGCGCGTTCCACCGCGGCG 12306 37 100.0 37 ..................................... ACCGTCGTCACGGTCAGCCGCTCACCCTGGGGCACCG 12380 37 100.0 35 ..................................... CTTTCATCGGGCCGACCGGATCGGGTAAGACACAC 12452 37 100.0 38 ..................................... TCGTACTCGGCGTCGTCGAGGGACTGCTGCTGGCGCAG 12527 37 100.0 36 ..................................... GTCATGGCCGAGTACAGCTCGCACAACCGCGCACGC 12600 37 100.0 36 ..................................... CCCCTGGTCACCGCGCCGTGGATCGACGTGTGGGAC 12673 37 97.3 35 ................................A.... CACCTGACCTTCCTCCGCACCACCTGACCCAGAGA 12745 37 94.6 39 .........A..........................T GTGTCCGGACACGCTCCCAACGATCCGAACTCGCGCGGC 12821 37 91.9 0 ..........C....T..............G...... | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 99.4 36 CTGGCGGTCGTCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CTCCCCTGGACGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGACACCACCAGCCCAGCCAGCCGACGCCGCCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAAAAATCCGTCTTCGAGATCGTCGCCGATGAGAAGGCGCTCCTTAAACTCCTCCATGACCTGGACCAGATCATCGACTCCGACACCGACAGCATCCGGCTGTACCGACTGCCTGCCGACGGCTTCAACCACGTCCAGACCCTCGGCACCGCACAGATCCAGCCCCACCATGGAGACCTCGTACTCTGACGAACCATGACGTCCGCTACACGGCCGACGGGCGGATGCGTGTTCCTAACGCACGCCTGCTTCGGAACCGGAAGCAAACACGCGACACGCGGATCGCACCGAAGCCGAATGTCCGTATTCAGTAGCTCTGTCACCCGCTGCTTACCCACACAGGAATGAGCGGTAGGCTGTTTCCGCTGCTCAGGCGGC # Right flank : CCCGGAGCAGGCCGTGATGTACGAGCCGGCCTCGTAGGAGGCCGGTCCGGTCGTGTGTGGTCAGTTGGTGCGGCGGTCGATTTCGTTCTGGACGGCTGAGATGGCTGCGAGGGCGTTGGCGATCGCGGCCCCCTGCTGGCGGGAGAGGTCCAGCAGGTCGTCCAGGAGGATTCTCTTGCCGGTGAGCTTGCGCTGGAAGTCGTCTGGCAGGGAGGTCTTCCTGTAGGCGTCGATGTGGGCGACGACGGTGCCGAGCGGGAGGTCGGGGAAGCGGCGTTCGGCCTGTTTGATACGGCTCAGGAGTTCACCGAGCTTGGTCAGATCCGCCTTCTGCGCTGCGGTGCCGGCGAGTTTGTCGAGGAGGACGACGGTCTCGTCGAGCAGTTCGTAATCCGGCTGGAAGCGCTTGGCCTGCTTGGCGCGCTTGCTTTTGCGGATCTGGTCGACGGAGAAGTAGGTACTGGTGAGCAGGGCGGCGAGGCCGATGACGGCCGGCCATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGTCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //