Array 1 19617-21170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZK01000013.1 Pluralibacter gergoviae strain JP84E9 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19617 29 100.0 32 ............................. GCCATTAACTTCAATTCGTCGTCGTCCTCTTC 19678 29 100.0 32 ............................. ATTTATCCTGGACAAATACGGAGAAAGAATCC 19739 29 100.0 32 ............................. TCTTTCATTGAATCATAGCAATCAATAAACCC 19800 29 100.0 32 ............................. AATATCTTCCCGCGACGGGGCAACTGTTGCTT 19861 29 100.0 32 ............................. ATAATCAATCAACGCATTGCGGTATTCTTCAT 19922 29 100.0 32 ............................. AAGTCCTTCGGGAAAAACTTGGACTGTCACGC 19983 29 100.0 32 ............................. GCGACGACTGGAACGTCATGTCATTCAGCTTC 20044 29 100.0 32 ............................. AACCTTGGCAACCAACTGGTCGCGATCGCTGA 20105 29 100.0 32 ............................. AACCTTGGCAACCAACTGGTCGCGATCGCTGA 20166 29 100.0 32 ............................. GGGTCCGACACCTACGAGGAATTGACCAACGG 20227 29 100.0 32 ............................. CAGCCTGTTAGCACGGACGTCGTCCAGCGCCA 20288 29 100.0 32 ............................. CGCCTGGACGACGTTTTCAGCCAGCTTCCCGC 20349 29 100.0 32 ............................. CGTGGCCGTATTACTGGCCGGTCCAGATACAG 20410 29 100.0 32 ............................. TCTCATTTAGGCGGGGATGCCGCGTATCATCG 20471 29 100.0 32 ............................. CAGTCACCTCGCGGCTTCATCCTGCGGTCCTG 20532 29 100.0 32 ............................. AATCCTCAGAGCATTCGACAGTCGTGTCATAC 20593 29 100.0 32 ............................. AGGTTGCTGACCTCGGCGTTGATGCATCTGCT 20654 29 100.0 32 ............................. TAAGCCGCTGCGACGTGTGCGTTGAGGGCACC 20715 29 100.0 32 ............................. GCAGTGGACCTGAATATAACGGGTATTACCAA 20776 29 100.0 32 ............................. ATCCGTACCAATCAGCTAGCTACCGTCAGGGA 20837 29 100.0 32 ............................. CTCTCTGCGGGATTTGGCATCAGCACCGAATT 20898 29 100.0 32 ............................. CCAGTTGGCAGCGGCTCTTCCTCGCCACATGA 20959 29 100.0 32 ............................. CAGACAACGCTTCGCCGGAAGAAACGCAGGAA 21020 29 100.0 32 ............................. GTGCTGGCCAGACTGACGGTAATGAGCTTGCA 21081 29 100.0 32 ............................. CGCGTAGCCCACTATCGCAACGGCCGCCCTGG 21142 29 93.1 0 .............T....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGAGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGCTACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : GATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTATGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTCATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGTATTGAGGCGTTAAACGGCTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCATTAACACCGGTGATTAAAATCGACCAGATTGAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31903-33456 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZK01000013.1 Pluralibacter gergoviae strain JP84E9 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31903 29 100.0 32 ............................. CTTACGGAAGCTCTTCATCTTCCGGCTCGTTA 31964 29 100.0 32 ............................. ATAATGCTCAACATCCTGTTAATCGTTTTCTG 32025 29 100.0 32 ............................. AATCAATACAGCCTGGGGGTCAAAATTCTTTT 32086 29 100.0 32 ............................. GTCGCCAACCATGTAACCGGGAACGTTATAAA 32147 29 100.0 32 ............................. ATTTTGCATTTTTACGCGCAACTAAAATTGTT 32208 29 100.0 32 ............................. ATATAACGCAAGAGACGTTATTGTTCTTGAGC 32269 29 100.0 32 ............................. TAAACAGGATTACCGCCGTTTGCTGGAATGGT 32330 29 100.0 32 ............................. GCATATGATGGTTTGTTGTCCGGGTCCTGCCG 32391 29 100.0 32 ............................. GGACGTTCCAGCTGATGAAGTGGGACACTAAA 32452 29 100.0 32 ............................. TTCACCAGCAATCAGGTCATCAATCTTTGACG 32513 29 100.0 32 ............................. CAATACGGCCGGCGACTGAATCAGCCTTACCG 32574 29 100.0 32 ............................. TCGATGCCGGCATAAAAATGCTGGAGTCCGCC 32635 29 100.0 32 ............................. GCTGTTTGCCGCGAGGCACGTCGCCGTCAATG 32696 29 100.0 32 ............................. TGCTCCGTGGGACAGTTGGCCCTCGTAAAAAT 32757 29 100.0 32 ............................. ATTTCCACCTATTTATATAACCCTAATGCTAC 32818 29 100.0 32 ............................. ACCTGGCCAAAATGGAGACGGCGGCGAAGAAG 32879 29 100.0 32 ............................. CAGTTATCAAATAGCTCTTAGCATTATTGTTT 32940 29 100.0 32 ............................. TGCCGGATCTGTTTCAACTGTCGGAACCTGGA 33001 29 100.0 32 ............................. TTCAGGATCCGTAAAGTCGGGACACCTACCTG 33062 29 100.0 32 ............................. TGCAGCAGCTGAGTTTGCGGCCCCTGCGTGTC 33123 29 100.0 32 ............................. CGCCAGCGACTCTACCAGGAATTCGGCTACCC 33184 29 100.0 32 ............................. TACGGTATAAATTTCAATGGTCGGGACTACGG 33245 29 100.0 32 ............................. CATTGAAGAACCCCTTAATCAGTTGGCAAAAC 33306 29 100.0 32 ............................. TATACATATGAGTCACAGGCATTATCCATGAT 33367 29 100.0 32 ............................. TGATGTGATTATACAGGTTGACGGATGGTATA 33428 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCTGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGAGTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : GACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCCGTACTTACGGAAACAAAACCAACCTAACCATGCCGCAATAGCTGACAATGCTCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCCGCACCAGCGGCAGCATCACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGTCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCCTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCGGCCGGTACGCCCCAGCGGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85391-86804 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZK01000001.1 Pluralibacter gergoviae strain JP84E9 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85391 28 100.0 32 ............................ GGTCGCGCTGTCGTATGCCAGGGTAACATTGG 85451 28 100.0 32 ............................ GATGATTACGACGGAGTAGACGTAACCTATAT 85511 28 100.0 32 ............................ TTTGACACTCGTCCAACCGGAGCTGGATCCAT 85571 28 100.0 32 ............................ ACACCCCGAAACACTTTCTTCGGGCACCTGTA 85631 28 100.0 32 ............................ TGAAACCGACGATATCAATGCAGACAGCATGT 85691 28 100.0 32 ............................ ATTCACAGCCATACCCCATTTGGGCAAGGTCA 85751 28 100.0 32 ............................ TGGGCGGAAGCGGAGGAAGAAGCAGTGAGAAA 85811 28 100.0 32 ............................ ATACGCCTATCGATGTCTACCTGAGACCACTC 85871 28 100.0 32 ............................ AGCCACCCCCAACCAACCGCCATATTTAAAAT 85931 28 100.0 32 ............................ CCTGCCTTTTCTGCTGCGCGCTGTGCTTGGGC 85991 28 100.0 32 ............................ TGGATGGATAAATTCGGATGGTCACTGATAGA 86051 28 100.0 32 ............................ AGACACAGCAGCATGTGGCTGCGCATAATTGT 86111 28 100.0 32 ............................ AACGCCGGAAAATCATATTTTCTGCTGAGTGA 86171 28 100.0 33 ............................ TAGAAAAATGACTGTAATCGGTTGAGAATTGCC 86232 28 100.0 32 ............................ TGGGCGAGCTGGCTGATACAGTCGGGCGTCCC 86292 28 100.0 32 ............................ GTCGATAACGCGGCGGCATCCGCAGTCGATAA 86352 28 100.0 33 ............................ TCCGACGGCACGCTGTCATCGAAATAATCGAGT 86413 28 100.0 32 ............................ TGCGGCGCTGCTGCAATCATGGAGTCCCACAC 86473 28 100.0 32 ............................ GATATTGACCAGTGGGCGCACCAGAAGGGATT CGC [86482] 86536 28 100.0 32 ............................ GGGTTCCGCGTGACATTGCGGCGTTTCCCTCA 86596 28 100.0 32 ............................ TGCAGCTATTTGGCGGGCCAATTCAGGCATTT 86656 28 96.4 32 A........................... GCGCAGGTCTGGCCTGAACACCGTCTCACAGG 86716 28 100.0 32 ............................ AGAAACAATCGTCATACGTCCGCCCCAGCCAC 86776 28 89.3 0 .......................CTC.. | A [86797] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTCGGCAAGCTGGTGGACGGCGGCCAGGTGACGGTCGACCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAGAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTCTGTGGCCCGGTCCGGCCCGGCGGTGAAAATGAATAGAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGAATGGCGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACATATTGATTTTCAATATGCATTTCAGGTGGTAATAAAAAAGGGTCTGCGCCACCAGAATCTTTTTTTTCTGTTTTATAACAGTGTGATAGAGTGTTCGATGGTTA # Right flank : ACATAACCCATTGACCACGTTCCTTAATGAGTGCTACCACTAGACCAAATTCGGGAAGCATTACATCACGCCGCGAGGGAATCATGCAGATCCTGCCATCAGATTTAAAAACCATCCTCCACTCCAAACGCGCCAATATCTACTATCTCGAAAAATGCCGCGTGCAGGTCAACGGCGGGCGGGTGGAGTATGTTACCAGCGAAGGCAGCGAGTCCTGCTACTGGAATATCCCTATCGCCAATACCACGGCGGTTATGCTTGGCATGGGCACCTCGGTGACGCAGGCGGCGATGCGCGAGTTTGCCCGGGCCGGGGTAATGGTCGGTTTTTGCGGCACGGACGGTACGCCGCTGTATGCGGCCAACGAAATGGATATAGATATCTCATGGCTTTGTCCGCAGAGCGAGTACCGGCCGACAGAGTATCTGCAGCAGTGGGTCTCTTTCTGGTTTGATGAAGAGAAGCGGCTGCAGGCGGCAAAGCGATTTCAGCAGGTCAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 96007-97295 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZK01000001.1 Pluralibacter gergoviae strain JP84E9 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96007 28 100.0 32 ............................ TATTAGAACAAAATTCGCTAGTCACCGCTGGT 96067 28 100.0 32 ............................ ATGTCGAGGCCGCTGCCGCTGGTTGTCCCGCC 96127 28 100.0 32 ............................ TACTTCGGGACTGGTTGAGGTTCGCTGCAGGC 96187 28 100.0 33 ............................ GGAAACATCCGGCGGAGAAATTATTGCTGCCAT 96248 28 100.0 32 ............................ AGTTCTGCATAGTCACTCGCCAGTACCACATC 96308 28 100.0 32 ............................ ACCCACTCTTCATAATGCTTATCGAACACAAT 96368 28 100.0 32 ............................ TCCTAGGCGGAGGCGCTCGGCAATGATTACGC 96428 28 100.0 32 ............................ GCCACAACAACACCGCAACTGGCGCAGAGTTG 96488 28 100.0 32 ............................ TGTTCATTGGTCAGCAGCTTGGCGTAAGTCGC 96548 28 100.0 32 ............................ TCGAACTGTCATGTGCAGAACGCATATCCACC 96608 28 100.0 32 ............................ ACTTACGACCGGAGCGCGAACCAGCACGGCAC 96668 28 100.0 32 ............................ TAACTCATCCTGAGTCTTTTCGATTTTGGTCA 96728 28 100.0 32 ............................ GGTGATATCAATGTCAGTCCATGTACCGGATT 96788 28 100.0 32 ............................ TTGGCATACGACAGTGCAACTGGAACGCCGTT 96848 28 100.0 32 ............................ ACCAGCGGTGCGCCACCGCCAATAACTGTAAC 96908 28 100.0 32 ............................ AGGCTGGATAGAGTGTATTCCGCTAACGTTTT 96968 28 100.0 32 ............................ TGAAATCTATGCAGGGTAAGCCGGGTGTCGGC 97028 28 96.4 32 ....................T....... AGGAAGGAATGATGACACCCGTACAGGGGGAA 97088 28 100.0 32 ............................ AGAATGCGTATAGCGATTCGTTCGCGCAAGGT 97148 28 100.0 32 ............................ AGCGCGCTCATGACGTGGAAAAAGAACCTGCC 97208 28 100.0 32 ............................ TACCGTTGAGTTCAGCGCCGGATAACCGTCAA 97268 28 82.1 0 .....................CCCA..C | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGCGCGGAGATAGCCGCTGTACCTGCGGGCGCCCGGTGGCGCACCGTCAGCCGCGCGCAGGTGAAAAGCAGCCCGCAGCGCCTGCTGCGCCGCTCGGTGCGCAAGGGCTGGATTTCGCAGGCGGAGGCCGATCGGCGGCAGGCAGTTACGCCGGCCCGAACGCTGAATCTCCCTTATCTGAATCTGAAAAGTCTCTCCAGCCAGCAGCACTTTCGCCTGTTTATCGCCCACGGCGAGCTGCGCCCGACACCCACGGCAGGAACGTTTAGCAGCTACGGGCTAAGCGCAACGGCCACCGTTCCCTGGTTTTGACCTTACGGACCGCGGTTTTCACCGCGGCCTTTTCTTTATTACGTTGCGGTTATGAAAACCCTTTTTTTGAGCAATGATCTAACATATTGATTTTATTTAACTGAAAACGTGAGGTAAAAAAGAGGGTAAAACATGGTTTTTGGGTGTTAATGGTTTTGTAACAGTGGGATAGAGCAGTTTTACTCTT # Right flank : CTCCGGACATAAAAAAGCCGGGAATAAACCCGGCTTAACTTTTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAACCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGTGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 98979-99265 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZK01000001.1 Pluralibacter gergoviae strain JP84E9 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 98979 28 100.0 32 ............................ TGGCAAAAGACTACGGCGTCGCGCCCGATCCA 99039 28 100.0 51 ............................ TCAACAGGCAGCTTAGAAAAAAGAGCCATCAAACGTTGCCTACCGGGGATT 99118 28 96.4 32 ...........C................ ACCGAGCTTCGTGACGTGAAAGCACAGCACAC 99178 28 96.4 32 .............G.............. AGTTACAGCCGGGAAATGTTTACATCGAAGTT 99238 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================================== ================== 5 28 98.6 37 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGCCGTTAGGCTCGCGCAGCGCGGCCTCCGGCGACGGAAAGGCGATAGAATGACGTGACAGCTGAACCAGACGCATGCTCTACAACTCCGGGCCTGATAATGAAAGAAAGCGTAGCCTAAACTCGCTGTCTGAACTGGTATTACGCCCGCGTCTGCTCAGCTATTTGGCGTGCTTACCATGCGAAAAATTTAGCGTGTTGTCTATCACAATTATGTGGCAACAGTGGCAGTTTTTTGCAGTGCGCGATTTCATCGCCCGGATGGCGGCGTTAGTGGCGGAATCATCTGCGTTTAGCGGGCACATGCAGGCAGGCGCCGGTCAGCCGGGAATTAAATTTGGCAGATTTTTTCTCAGGCGATGCGTTGAGCAGACTTTTTTTTCCGCTGTTGCTAAGTTATTGATTTATTGATGCCTGATTTGCAACGATGAAAAAAGGTATTGGCGCAAAATTGAGGGTAATTCTTTTTTGAAACAGTGCGCTATAGCGATTACCCTCTA # Right flank : AATTTTCCCCCTGATGGCTTAACTCCACTGAAACTATTGGGGATATGAGTGAGACGTAGCGATCACAGTGAGAGGCGTCAATTTTCAGACTCTAACCTGTAGAAGGATAGTCTGTTTCAGTGTAGTTTGAGTTTGAGGACGCTTATACAATGCATTTGTTAGCCACTGAGAAAATGAGATGACGCTTCATGATTACACCGTTAAGTCTTGCGATGCTATATACATAGAAGATATACCTTGTATCCTCCATCCCAACATCGCATATCGCTATCTGGAATACACCGGGATGCAAAACAGAATTATCCAGGAGTGGGATTTTCCTTCCGGTTATAAGGCGTATGCCGATCAGTATCGCCATTTTCATATAAACCATCCATTTATGGCATATCGCTCTGCTCTTAATGATATTAAATCGGGAAAGATTATACTGCTGAAAAGCCTTCATGGTGGTAAGGAAATATTTAGTGTTCAAACACGATCTGGTAATTTGTGTACAGATC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //