Array 1 456-712 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDS01000434.1 Streptomyces acidiscabies strain 98-48 9848_434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================ ================== 456 29 100.0 32 ............................. GACTACCGCCAGTTCGTGATCCGCGTCGCCGA 517 29 100.0 32 ............................. GAGGCCCTGCGCCGCGTCCGGGAAGGGAAGTG 578 29 93.1 76 ..........................AT. CGCCGCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAAGGCGAC A [602] 684 29 62.1 0 .C....GTT...G.A.AA.......AT.A | ========== ====== ====== ====== ============================= ============================================================================ ================== 4 29 88.8 47 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTGGCCGGTGGTGGGGGTCGAGCCGTGGGCTGTGGTCTTCGTAAGCGACGGGCTGCGCCGCACCCCCGGCACCCCGCTTCCCGCCGTACGCGGCTCACCCGCCATGCCGGTGCAGGCAGGGGCGGACCCGCCGTTCGCGACTCACCCGCCGTGCGGGGGGGGGCTCGCCGGTACGGGGATGGCATCCGCACGAAAGCGGCCACCGGGGGTCGTGCGGCACGCGGGGTCAGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGGTATCGCGTCCGCGCGGGGTTCTGGCGGTGCACTATGAAGGGCGACGGCACCTTCAGGGAGGGACAGCGAGGCAGAAATGTCCGCTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTCTG # Right flank : ACGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGCGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTTCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGTCGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCGCCGATACAGGCCAGGCAGCAGTAACGCAGGACGCTGTCCTTGCCGAGCTTCAGGGCGGCTGCCTCGACCTCCGGGAGGAGGAGGTGGAGGTGGCCGCGGAGGGTTTCGATCAGGGTGGGGAGGT # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-1.39, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3349-3803 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDS01000434.1 Streptomyces acidiscabies strain 98-48 9848_434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3349 29 100.0 32 ............................. TGGGAGAACGGGCGCACGGAGCCGAAGCCGCC 3410 29 100.0 32 ............................. GTCCCGGTGCTGTATTTCTCGGCGGACTCAAG 3471 29 100.0 32 ............................. GGCGCGACACAGCCGAACAGCTCGTCGTTCGC 3532 29 93.1 32 ........T.........A.......... GGCAACGAGGACACACACCTTCTCCAGGTCGG 3593 29 96.6 32 ........................T.... TCGGCGATGAGCATCCGGGCCAGCTCCCGCCT 3654 29 100.0 32 ............................. GGTCCCCGTGTCGCGTGCCGACCCGCGTTGTC 3715 29 100.0 32 ............................. AGCTTCAGGTCGAAGACCTCGCTCTCCTTGCC 3776 28 75.9 0 .............CC..A...C.-CC... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACGCCTCTCGCGTCACGGGGTCCTGAGCCGTCGAGCGACCCGGCCCAGGACCCCGCCCCCGAGCAGGACCGCGCGGCGGACGCGGAACTCGCGCGCCGGCTTGGTGGTGCGGGGTGAACTCTGGTGTGTACGGGGCTGAGGTTCACGTGGGGGTGCAACCGTCCAACTGACGGCAGGGGATGGGCGGGGGCCGAGGGTCTGGGCCTCGTGCGGGGTTCGTCGCCGGTACGGGGATGGCATCCACGCGAAAGCGGCCACCGGGGGTTCGTGGGGCACGCGGGGTCAGGGGCCGGAGCACGAGTCTGGGAGCCTACGGTTCGGGACGCGCTGGGGGCGTCTCGGGGTAGGGGTTGTGCGATATCGCGTCCGCGCAAGGTTCTGGCGGTGCACTATGAGGAGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATGTCCGTTTCTCTGGAAGTAACGGATTCCGAGCGGGCGGCGGAGTAAAGCACCAGGTCGGGGTCT # Right flank : TCACCCCGCCAACCCCACCGCATACTCCCCCCACCAAACCCCCGCC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17223-16961 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDS01000517.1 Streptomyces acidiscabies strain 98-48 9848_517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17222 29 100.0 32 ............................. GCCTCCAGGAGGCTGGGCTGGGTCGACGACCC 17161 29 100.0 32 ............................. TCGCCGACAGGCCCTGACCTCTCACCGGTGCT 17100 29 93.1 21 ................T........G... GCCTCAGGCTTACGCGGCTTT 17050 29 100.0 32 ............................. CTGTGGGCGAATGAGTGAGCGGTCGACGGACG 16989 29 82.8 0 ............T............GGAG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 30 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GCAGGGTTTGGGCCGGGGGGTTCGGGGAGGGGTGACGAAATGTCCGGTTCTCGGGAAGTGATGAGGAACGGCTGCTCGCCCGGGTAAAGGCCCAGGTCACGGAC # Right flank : AGATTTCCCTGTTGGCCTGGAGCGTCCAATGCGGTCAGCGAAATTGAGGGAGGCGGCTGTCACGGTGATCGTGATGCGGTCTGTGGACGGTTAGGGCGAGGTTCAGTGGGCGGCATGCGGAGTCTTTAGGGAGACCCGATAATCAGGCCGACGTCGAATTCGCGGAATTAGCCTGTTCTGACCTCAAAGGGGAGACGTGAATCGAGCCACCAGCACCTTGCTGTCCTTCTCTGCCGCGCTGATCAGTATCGGGGTGACCGTCGCTCCGGCCAGTGCAGCCGATTCCTCGCGTATCGGTCCCGTGCATGTGTCCAGGGGCAGCGGCGAGGAGATCATCCTGTTCGACAAAGGTTCTGAGTTCAGGTCGGAATCCGGATCAGCCAGCGGTGAAGTCGGCTTCCGCGGTGGATCGTTCACATGGGTCGCCGATTTTCAGATCGGGTTCGAGTCCCGCCACTACACCGCAGTCGACGCAGGCACCCACCGGATTCAGATCAACG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.22, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //