Array 1 38437-36543 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDH01000008.1 Riemerella anatipestifer strain RCAD0188 ZB100007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 38436 47 100.0 30 ............................................... GGGTCTGACGGTAACTTGCCCGGTGGCTTG 38359 47 100.0 30 ............................................... GTCTGGCCGATGTGCGCAATCACCTGTCGA 38282 47 100.0 30 ............................................... TGTTGCCCTTGCCGCGTACGCGCACCAGGC 38205 47 100.0 30 ............................................... CAGGCGAAAGCGCTTGCAGCCTGGGGCCTG 38128 47 100.0 30 ............................................... TGGCCCGCCGCACCCTGGACCGCCGGCGCG 38051 47 100.0 30 ............................................... AGACTGGCGTGGTGCCGTTGTGCGCCGGCT 37974 47 100.0 30 ............................................... CTAATTTATATATAGAAAAAAATCGTAAAG 37897 47 100.0 29 ............................................... CTCTCCCGCTTGCGGGAGAGGGCAGGGGT 37821 47 100.0 30 ............................................... GTTATGATTGCTGTTTTGTTTTTTAAATCT 37744 47 100.0 30 ............................................... ATTCGGCAGATTATTACAAGATTGATTTTA 37667 47 100.0 30 ............................................... ATCCAAAACGATTTACAGCAGATTGCGAGT 37590 47 100.0 30 ............................................... GCGATTCCGGTTCAGGCCAGCACCTGGAGA 37513 47 100.0 30 ............................................... TAGTATTGGGATGTGTTATTTAAAAAGTGT 37436 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 37359 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 37282 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 37205 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 37128 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 37051 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 36974 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 36897 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 36820 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 36743 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 36666 47 97.9 30 ........................G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 36589 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 25 47 98.6 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 14307-12009 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDH01000012.1 Riemerella anatipestifer strain RCAD0188 ZB100011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 14306 36 97.2 30 ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 14240 36 97.2 30 ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 14174 36 94.4 30 .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 14108 36 97.2 30 ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 14042 36 97.2 30 ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 13976 36 97.2 30 ................T................... CCTTTTCCTCATCACCTTCGTAGATGCAGA 13910 36 97.2 30 ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 13844 36 100.0 30 .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 13778 36 100.0 30 .................................... GGAGCCACCAAGATATCCCAAGGGTTCGTC 13712 36 100.0 30 .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 13646 36 100.0 30 .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 13580 36 100.0 30 .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 13514 36 100.0 80 .................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGA 13398 35 86.1 80 ...C...A....AG..-................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGA A,T [13387,13394] 13281 35 83.3 81 ...C...A...G-.A.............C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGA A,T [13264,13277] 13163 35 86.1 81 ...C...A...A-.A..................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGA A,T [13146,13159] 13045 35 83.3 82 ...C...A....AG..-.............A..... ATATTAAGGCTACAGCACAAAACACAGAAAGTTGGGACTGCTCTCAGTTTAGCTCACAGCTTTGTTGTAAGTTTTCAGCGGA G,T [13034,13041] 12926 35 83.3 79 ...C...A...G-.A.............C....... CCGTTTAGTTTACCGTCATCTGCTAGGTCTGTTGGGACTACTCTCATTTTACTCACAGCTTCGTTATATTTTCAGCGGA A,T [12909,12922] 12810 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [12792,12794,12806] 12693 35 83.3 79 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA A,T [12676,12689] 12577 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [12559,12561,12573] 12460 35 83.3 79 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA A,T [12443,12456] 12344 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [12326,12328,12340] 12227 35 83.3 80 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGAG A,T [12210,12223] 12110 35 83.3 30 T...T..A....AG..-................... AATTTCTCATATCGTTATTATTTTACTAGT A [12100] 12044 36 88.9 0 ...........CA...T.C................. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 26 36 91.5 54 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : TACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATAACAATAATGCACAGCATTTGAAGGGTATTCACAACACCAATAAATACAGCTTATTTGCTCCTAA # Right flank : ACCTAAGGGCATAAAAAAATCCCTGCTCTGTACGGTACAGAGCAGGGATTTTGCTTCCTATTTATTCTATTACAGAAAATACCTCACTTCCTTAGTACAGGCGAAGTCGGTTCCCTCGTACGAGGGAAGGCTCTTCTCCTTACCGAGAGAAGAGCCTTCGCCTTAGGCAGTGAAGTGTCTTCCTCTTATAAAGCGACCGCCCTTCCTTAGCATTAAGGAAGGGCGGTCTTTATTTAGAAGTGCCAAAAACACACTACACAATAGTAATAGGCGTGCTTAGTGTTTCGGTTCGGGGTTCTTTCAGTAAGGTAGTGCCTTTACTGCTTTGCGTGGTGATGCTGAGTTCATAGTTACCCGCTTCTAAATCTGTAGGAACGAGAATGAGTAACCTTGACGGCTCATTAAGGACAATATGCTCTGCTGAGAGTTTCACTTCTTGCTGAGTGTCTAAGTTTTTAAAGACAATACCGTTTTTAGGGTTGTCCCCATCTATTTTAATG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-1.59, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [67-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //