Array 1 546425-545277 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOOH01000016.1 Escherichia coli strain SC320 NODE_2_length_698794_cov_113.565_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 546424 28 100.0 32 ............................ TTCTCTTACAGAAGGCACCGGGAGGGCACCCC 546364 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 546304 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 546244 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 546184 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 546123 28 100.0 32 ............................ GCATATGAGATGAGCGAGCGATAACGCCTTTA 546063 28 100.0 32 ............................ CGATGAGCTGTCGATGAGTCGCCCTGCGCCCA 546003 28 100.0 32 ............................ GGTTACGCCAACCCTGCACAGTTCACCACCCC 545943 28 100.0 32 ............................ ATCGAGATGGAAGACGAGCACGGCACCAGTTA 545883 28 100.0 32 ............................ GACCTGAATCCCAAACCTACCACCCACAAAAA 545823 28 100.0 32 ............................ GCTAATGTCTGCGGAGTATGAGATCGCGCTCC 545763 28 100.0 32 ............................ CGCGCACGTCGTCATTTAATACGTCATCAAAT 545703 28 96.4 32 .............T.............. ACGCCCAGCGACTGACACCGATTGTGGTCCCG 545643 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 545583 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 545523 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 545463 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 545403 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 545304 27 85.7 0 ...G...A...............C-... | T [545285] ========== ====== ====== ====== ============================ ======================================================================= ================== 19 28 99.1 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 556897-555482 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOOH01000016.1 Escherichia coli strain SC320 NODE_2_length_698794_cov_113.565_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 556896 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 556835 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 556774 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 556714 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 556653 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 556593 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 556533 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 556473 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 556413 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 556353 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 556293 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 556233 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 556173 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 556113 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 556053 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 555993 28 100.0 32 ............................ CAGTCCAGAACCTCGTCAGCGACGGTACTCGC 555933 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 555873 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 555813 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 555751 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 555691 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 555631 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 555571 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 555511 28 85.7 0 ....................T...C.CT | C,A [555485,555488] ========== ====== ====== ====== ============================ ================================== ================== 24 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //