Array 1 309167-309974 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VTIF01000002.1 Listeria monocytogenes strain FSL L7-0641 NODE_2_length_480259_cov_20.263190, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    309167	    29	 100.0	    36	.............................	TTTGTATTTGCGTTGAAAATAAAGTTCAAACAATCG 	
    309232	    29	 100.0	    36	.............................	AAAATTTGCACCACTGACGGATGCAGGTACGTATTT 	
    309297	    29	 100.0	    36	.............................	AATGTTTTCCGAAGCGTGTGAGTGCCTAAAGCTGGC 	
    309362	    29	 100.0	    36	.............................	ATTTTTGTAGATAATAGAGAGTCGGTAACGGAACTA 	
    309427	    29	 100.0	    36	.............................	TCAACTCTTCAATTAATAGCTCTAGCTCTAAAATGC 	
    309492	    29	 100.0	    36	.............................	AGCTTTATTCACAGTTATTGAACGTTTGTTGAAATT 	
    309557	    29	 100.0	    36	.............................	TTTAATTAGCTAACACCATAACAAAAACCCACCCCA 	
    309622	    29	 100.0	    35	.............................	CAGGTTACTGAGAATGGCTTTACAAGGCGGTTGGT  	
    309686	    29	  96.6	    37	..............A..............	TCTGCTAGCGCTTTTTTCAGGTCTGTGTTAGTTTTCT	
    309752	    29	 100.0	    36	.............................	ATACCTTTTGCAACTTTAAGCAACCGTGAATGGAGT 	
    309817	    29	  96.6	    34	..............A..............	CTCCACTTTTTTGGATCTTTCGCTGTCCACATCA   	
    309880	    29	  93.1	    37	C.............A..............	GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT	
    309946	    29	  82.8	     0	......A........CA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        13	    29	  97.6	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATTACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATAGGAATTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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