Array 1 1180598-1178891 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUQL01000001.1 Listeria monocytogenes strain CFSAN003456 ABY94_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1180597 29 100.0 36 ............................. AACGCGGCGGCAGCTGAACCTAGCGCGACTTTAAGC 1180532 29 100.0 36 ............................. AATCTCCTTATTTTTTTGATATTCGTTCATGTCAAA 1180467 29 100.0 35 ............................. TTAGCTGCATCATGGGGAGCAGCTAAAGAGTTTGT 1180403 29 100.0 35 ............................. CTAACAATGATGCGTAAGACCGCAGTTGTTAATGC 1180339 29 100.0 35 ............................. TCCCATCAGATAAGCCGGGCTTGTTTTCAAAATGA 1180275 29 100.0 34 ............................. CCAACTGCCCACCGACTTGCCAGTTCTGAGTTTT 1180212 29 100.0 35 ............................. TCACATTACACATCTAGAGGAATTGAACCCATCAA 1180148 29 100.0 35 ............................. ACGGTTAGCCCAAAAAGAGCTAATGCATTAGCCCA 1180084 29 100.0 37 ............................. ATACCTTAGACTTAAAAGAGACTTCTAAAGAGAATAA 1180018 29 100.0 36 ............................. AATCTTTAGCTATTGGTCTTGAGAAAGCTATCGTAA 1179953 29 100.0 35 ............................. GCTGATAGCCCCTCGCGTAATGTGTCCATGTCCTT 1179889 29 100.0 41 ............................. AAAGAAACACTGATTTACATCGGTATACAACAAGACGAAAT 1179819 29 100.0 35 ............................. AGATTCACAACTCCTAAACCATACTCCCAGTAACT 1179755 29 100.0 35 ............................. TTACTTTTTATCATCGTCGCTTGATTTCTAGTTAA 1179691 29 100.0 35 ............................. GATGTTGCAAAAATGAAACTCAAACCAGCACTAAC 1179627 29 100.0 34 ............................. GCAGAATACATCGCATTAGCTGCTGTATTTCCCA 1179564 29 100.0 35 ............................. TTTGCCCTTCTCTTTCGACCACAATCCCAGCAACT 1179500 29 100.0 35 ............................. AAGGTCTTTTTAGCCTCATCAAGATGCTGCCCTGT 1179436 29 93.1 34 TG........................... AATGTTTTACATATTGCTGTATAAAATGTCTAGG 1179373 29 100.0 35 ............................. CAATAATGAAGTGATTTGTTTATCACCACATGCTA 1179309 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1179245 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 1179180 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 1179116 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 1179051 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1178985 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 1178920 29 93.1 0 .......................C....C | A [1178895] ========== ====== ====== ====== ============================= ========================================= ================== 27 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGCCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTTGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1197830-1197409 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUQL01000001.1 Listeria monocytogenes strain CFSAN003456 ABY94_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1197829 29 100.0 36 ............................. GGAGAAGGATATCTTCACGCCATTTTTTGGGGTCAA 1197764 29 100.0 37 ............................. GATAATAACGAAATAAGACCGAGATTAGTTTTCCGGC 1197698 29 100.0 37 ............................. TCATTAGTTCTATTTTTTGTCTAGCAACCTCACACAA 1197632 29 100.0 36 ............................. GGATTAATTGCTAAACAACCAAACGGATTATATTGT 1197567 29 100.0 36 ............................. AGGCATATCATCAGCAAAAAGCACATCAATTGCAAG 1197502 29 96.6 36 T............................ GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 1197437 29 79.3 0 A.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAATTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //