Array 1 27564-28695 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUNP01000027.1 Bacillus cereus strain AFS035470 AFS035470_104_F1_Contig27_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 27564 28 85.7 39 ............TAC.....A....... TCAAAATAATAAGTTTCTTCTGACTCCTCGTTGTTATCG 27631 28 89.3 37 ............G.G...C......... AGGACACTATGACCATGTACATGTAGGCCGGCAAGAC 27696 28 78.6 38 ......C.....TAC....T......C. GATAGGTATCACGGATAGCATCTTTTCTTTTAGATTCG 27762 28 89.3 30 ..............C...C.A....... ACTGAAAACAAAATGTTAGAAATGATTGTT 27820 28 78.6 37 ...........AG.G..C..A......A TAAATCATCTTTTTTCTTTAAAGTTCTGTTATGATGT 27885 28 82.1 37 C...A......TG.....C......... AACGATTTATACAGATGTTACAACGGGGACTGTCGTC 27950 28 89.3 37 ............T.G...C......... GTAACTCCACTCTACTAATCCTGAACAATCAAAGTTA 28015 28 89.3 38 ...........T..C...C......... AGTTACCTAAGTCTCCAATATCAGCACAAATGATGTCT 28081 28 85.7 39 ............TAC............T AAAAATCTCCCTAATTTTGAACGAGGTTTTTTAAACCAT 28148 28 100.0 37 ............................ CTTGAAATCTGTTGATGTGAATGATGAAGCCTTTGCT 28213 28 85.7 37 C...A........C....C......... AGGACACTATGACCATGTACATGTAGACTGGCAAGAC 28278 28 89.3 36 ............TGT............. AGGAAACAAATCTACATTGATGTCTTGCTACATAAA 28342 28 71.4 37 ....AC......TAC..A..T.....C. AGATCGAAGCAAGCAAGAATTAAAACGCTGGGTGTAG 28407 28 89.3 37 ....A........C....C......... AGGACACTATGACCATGTATATGTAAGTTGGCAAGAC 28472 28 82.1 37 ......C.....TGC..........G.. GAATTTAAGTCAGAATTAAATTAAAAATTGGGAAACC 28537 28 89.3 39 ............G.....C.T....... GATATGAATGGAACGTATGCGTTTTATATGTTTGTGAAC 28604 27 89.3 37 ...........T......C.-....... TGCTATTGTAGTAGATTATTTTCGATGTTCAAACATG 28668 28 85.7 0 ....A.......G.....C.......C. | ========== ====== ====== ====== ============================ ======================================= ================== 18 28 86.1 37 TTTATATCCCACATAGTTTAGATAAAAC # Left flank : AAAATTAATCATGTTACAGATATCAAATATACATAACGCTTAAAAAATTATGGGATGGGGGAATTATGATGAAAAGTCAAAAAGAGCTTATCTATCATTTTAGAGAGTTTTGGGATTTTGAGTATATCTGTTTGGAGAAAAAAGGCTTGGGGTTCCCAGAATTAGAAGAAGTAATGTTGAAATATCACATGTATAAGTCTGATGAGAATTTAGAATTTAAAGAGTGTTGGATACATCGTGAATTTGTGGATGGAGAAGAATTAAGAACAGTTCAAATTATATATGAAGATAGTAAAATTAATAGGGTTGTTCGTTTGTGGGGATCTAAGAGAAATAAAGATGGAAAATTTCTTGCAATGACAATGGACTTTTTAAATATAGAAACCAAAGAACTTGAATGTGAAATTGATTTAATGAAAGATAAAAAATTTGAAGGTAGAACCCATAGAAATAGAGCCCTTTTTAATTAAGACTCTATTTCTATGGGTTCATTATAAACT # Right flank : CCCCTATCTATATAGGAATGTACACTTTATGATAGCAACATTTTACTACGTGTAGCAACGAGCATTTTGCAACAAACCATCAGTTGTATTTTTGTATTCTCTTCAAACATACTAAAAAACTCTGTCATAGTAAGAGTTTCTGTACGTTTGATAAAAACAAGGGTCACTGCAAAATTAAGGAAGCATAATTCCTGTTCCTGTTCTCTTTTCTTTATCAAAATCATACTTACAATTTAGAGTGTGAATGTATTGAAGCCCAGGAATATCAATTGCCTTTGTTTCGATTCCGTATCGTTGAACTTGTTTTCTAGAAATAGAGGTTGTAAGCTTTTCGATTTGCATTCGTAATACTTTTCGCTGTCTAGAATCTTTTTCCTGTTTAAATGTTTTAAATAGCTCAAGATTCTCTACATATATAGAACAGGGAATAACTTGATAATTATCAATATCACGCAGCAACCTTTGCGCTTCTGTATTTCCCATATCATTTAGTGGTAGTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATATCCCACATAGTTTAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [27-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 36366-35428 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUNP01000027.1 Bacillus cereus strain AFS035470 AFS035470_104_F1_Contig27_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 36365 28 100.0 38 ............................ AGTTAATTAATAAAATTACGCTTGCTGACAGAATCAAG 36299 28 92.9 37 ............G..A............ GCACATTTGAAGTAACTCAATTATTAGCAGAAGCGAC 36234 28 96.4 37 ....................A....... AATAAACGCGACAATGACATTCACAGTGTTATGGTAC 36169 28 89.3 37 ...........T........C......A TTCGACTGGCGAAATGATTTATACAGATGTTACACCC 36104 28 85.7 37 .........T.T..C.....A....... ACAAGGATTTTTTATAATAGTTTGCTTGATTTTCCAA 36039 27 85.7 38 ..........T.-.....T........T CAATTCAGCGTTTAGATGGCAACATATTTAAGTTAGAG C [36024] 35973 28 100.0 37 ............................ GGCGTTCTTTTGTTGGTTCAATTTATCAACAACATAC 35908 28 89.3 38 ....C.......T.....T......... TAATGTGCGATTACATGAAACATTATGCAGAAGATCCC 35842 28 92.9 35 ...........T........C....... GGAAAAAAGTACTAATAATCGATACAGATAATCAC 35779 28 92.9 37 ...........T..T............. AACTGGAAGCCAAACAGATCTACACTGGAAGTGGTTA 35714 28 89.3 37 ...........T..C.....A....... AGATCTACTTGCACTCCTCATGACGTATAAGCCGCCC 35649 28 92.9 38 ...........AT............... GCTTCCTTGCTTACAAGAGCGGGTTAGCGCGTGGAGTC 35583 28 92.9 37 ...........T..T............. GATTAAAAATCTAAATGTTTTTATTGCAGGTGTACCC 35518 27 85.7 35 ..........G.-.....T......G.. GTAAATCCTCGTAAGAAGGACGTAAGTCTAAGTTC C [35504] 35455 28 85.7 0 ...........T.......GA...C... | ========== ====== ====== ====== ============================ ====================================== ================== 15 28 91.4 37 TTTATATCCCACATAGTTCAGATAAAAC # Left flank : ACCAGTGGTCAAAATACGGCTGTAAAATTTGCTAAAGAACTTTATTTCGGAGATAAATTAGAGGATGCTTTGAATTATTTAAAAACAAACTCGGAAAGTGCATTTCAAAAATTATTCGAACATCTGATGAGTAAATTTCAATTACGAATTTACAAAACTCGAGGAGAAAAAAATTTTTTTCTTTCTGATAAACCTATTCTAGTCAACAAATTTGAAGAAGCTGATTATGTACTTCCTATTTCACCTAAAATCTGTATAGGTGCATACCCCTTACAAAGAAAAAAAGGTAAGGTTTTTATATACAGCCAAATTACATATTTGTCAGATGATGATGTTAACAGAATTAACAAAAAGATTATAGAAAATACAGAAAAAATGTTGATTATTCAAAGTAATGCAGATCTAGAGTTTGTGAAAGAATGGAGAAAAATATAAAAAGCATTATATAAGACAAAAAACTTAAAAGAACATTTTAATCGAGGTCGCTTTGCTCTTGTTTC # Right flank : CCAATCTATACACGAATGGTATACCTTATGATAGCAACATTTTAACATATGTATCAATCCATATTCGGAAACGAATCATCGATTGTGTTTTTTTATTCTCTTCAAACATGCTGAAAGACCTTGTCATATCAAGGACTTTCAGCATGTTTGAAAAAACGAGATTCACTTCATAATTACAAAAGTATCACATGATTTTTATTTTTACTATATAGGATCAAGAGAAAATCTTTATTGGTACAAAAAAGTTTTCCCATTTATTTCTATATGTTTATTGATTCTTAATTTTCAGATATTTTATAATGGTCTTATATTGAAGAACAAGGAGGAAGATGATGAGGTTGAAAGTAAGCTTTACTTGCAAAGTAATTCCTCTCTCGTATCGTTTTATGTTTGTGAGCTTTATCAAAGAAGCTCTAAAAACATCAAACGCAGTATATGCAGAGAACCTATATATCTTTGAGAATAAACCGAATAAAAAAAGCAAGAATTTTACGTTTTCT # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATATCCCACATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //