Array 1 108389-108625 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018256.1 Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 108389 25 100.0 47 ......................... TATAATTCTGGGCGAAGTATACTTCCTTTCTGAGACTTTCAACCCAC 108461 25 100.0 47 ......................... ACTGAAAAATCATAGTCCCGTTTCCAGCACTTCAAGCTTTCAACCCA 108533 25 100.0 44 ......................... TATGACAGGTTAAGGTTAGACCCGCCTGACCAAGAACTTTCAAC 108602 24 84.0 0 ...-CC...A............... | ========== ====== ====== ====== ========================= =============================================== ================== 4 25 96.0 46 CCATAGCTGGAATGGTTATTGAAAC # Left flank : AACTCGACTTGTTTAATAGCTTTGACGGGGATGCTGAGGGGTTAGTCGGCTAAAATCCAGAAGAATCCGTATCCATATTTTAATGAAATTGGAAACGGTATTTCAATTTGATGTTGAAGGTATTCTTGGTCAGGCGGGTCTAGCCATAATCTGTCGTACTCCGCGTATATTTTAATTAATTGTAGAGGGACAAGCTAAATGACCGTGGAGACAATTTATTTGTCAAAATGCAGAGAGACAATTTACTTGTAAATTTTACCCAAATAACCATCAAAGCGATAAAAAAACATATTAACTTTCGCTTAACTGTTGAATAATAATCATTCTTTCAATATATTGCTTGCTAAAATAACTGAATATCAATAATTTTGCAATACATCTCAATTTTCAAGAGTCCTATGCTCTTTTCAACTTTCCGGAGCCACATTGATTTTGAACTACTGTCGAAACAGTTATTCTTTCATATACAAAATAGCTGCATCCCAAAAATTTCAAACCAC # Right flank : CTCCGCCAATCCAGAACCTTATCAGTAAAGCTTTTTCTAATACAAATTTGGTGCCGCCCTAAAAAAGCATCTTCATTATAAATGAAAAAATTAAATTAATTGACAAGCTTGTACTTGAATCAGTTACCATATAAGGATTTTAATATTTTGGCGGGATTCCAGTGATTTTACCTCCGCTTCGATACGCCAAAAAAAATATTTGGAGGGTTCCCCCGACGAAGGGGGTGATTCAGTAGCCACCACTGAGGTAGTCCTCACCGTTATGCAATTATGCAACGGTTCAAGCTTTTCAGCTATACTCTTTTTTGCTGGGAGCGCACCTATCCCTCTTTTCCGATTCCTAAATATAAGCATTCTTCTTTGTTATCAAAACATAGAAGTATGTTGGTTATCCTAAGACAGAAAAGAAGATGTATCCTGTCTGAACTAGCCAGACAGCAGCTTCAAGAGCGGGCAGCTACCAGGGTCCAGAAAGCAAAACGGTTTTCAACCCGTTAAAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATAGCTGGAATGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 180983-181700 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018257.1 Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 180983 36 97.2 43 ................T................... GACATCAGAAGCCGCATTTCTTGCGTCTTCGAGGTTGTCTTTG 181062 36 100.0 36 .................................... CTCACAAACTGCTCTAGACAAATCACAACCAAGCAG 181134 36 100.0 40 .................................... GAAAGATGCCACGCTATCAAACCACAAATATAGAGTGAGG 181210 36 100.0 44 .................................... GGCCAGCAGCAATCGAACAGGCGGGTAGTTCCCGATCCAGCCCG 181290 36 100.0 39 .................................... CATCCACCGCAACCGTCGTCGGGAACTGGGTCAGCCTGG 181365 36 100.0 36 .................................... GTGATTCTGGACTTCCGGTCGAGGCAGACGTACCGA 181437 36 100.0 44 .................................... GACAATAATCCAAAGCGCTGCCTCGATCAGTGAGTACTCGCCGA 181517 36 100.0 36 .................................... CAGGTTCATTTCGACTTCTACAGCCCTTCCTCCCAG 181589 36 100.0 41 .................................... CCTGCTCCCTTTTTGTAGGTGTCGCGCTTGATGTTGTGGAG 181666 35 80.6 0 .T.....A.......-..............TACT.. | ========== ====== ====== ====== ==================================== ============================================ ================== 10 36 97.8 40 TCACATTCTTTACTTACCCCTCACGGGGACGGAAAC # Left flank : GTCCCGGTGGTAGTGGTACAGCTTCTTTTACCAACCTTGTAGATATTTCTAGCACCGCTGGTCAAGCTATCGCTGTTAAATAATATAGTCTCTCTAAACCACACTTCTAGCATAAGGCGCTCTAATTCAAGGCGCCTTTTTAGTTGGTGCCTATGTTTTGTTTTATTACACGGGCAAAAGTGGCGCCTGTTTCTTTATGACGTTGGAAGTCTTGTTATATATACAGTGTGTTGATTGTTAAGGAATGTAAAACTGGCGCCGGAATTAGCGCAACGAGTATATAAGACTATTTCAATGATAATCAAAAATAAAACGAGATAATATAGGTTAATTGGGCTAACTTCTGAGTAAAATAATTTTAAATAGCTAAATATAGCATTAATTTGCTTATTTACTTATACAAGAAAGTGTAATAAGCTTTTGATACATCAGCTTTGTCAGTAGACTGGCGCAACCGCACTTTGAAAACTGAATATAGTAAGGCTTTTAGGAAGGTAGGG # Right flank : CCAATACGTCTTACAGGCGCCACAATAATCTGCACATCCAAACAGGCACCATAATCCAAGTATCTAGATACCTAAATATTTACTTAATGCAACAGCAATATACTGTCCTAACTTTACAGGTACAGCGTTACCAACAACTTGCTCTAAATTAGTCTTAGTTTAATTCTCAATATCAAAATCAAAACCCTTGGGAAACGTTTGTATATAACTCCTCTCAATCGCAGTCAGCGCGCGCACTTTTCTAAAATGCCAACAAGCATCATTCTTGTGAGGGGTGTAGTTCTTAGATATCGGTCTATTTGTCCCACAAATGGTTGGACTAGGTTCATCGATGCTAAATATTGCTTTCCGCTGGTAACTGCGCGCGTGTCTATAATAAAACTCTACGCGTAGAGAAAATTTACATTTTTAAAACGATAGGCGTTTAGATAGAGATAAAGTTGCAAGAACGTTTCAAGCACCCGCAAGACTTTTTACCCCTAGATACAACATCTGCTATA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACATTCTTTACTTACCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3747151-3748842 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3747151 37 100.0 34 ..................................... AAACAATGATTGTACTTAAAGGCAAAGTCGTTAT 3747222 37 100.0 33 ..................................... TGAAGCTTATCTCTCTAATGGTAAGCAACTTAT 3747292 37 100.0 37 ..................................... AACAAAATCATAGCGAATGGTGAGGAGTGGACAAAAG 3747366 37 100.0 34 ..................................... TTGATTGGGTAAGCGCTGGGCGTGACTATTAAAC 3747437 37 100.0 37 ..................................... TTTGTAAAATATGCTTTTGATTTTTCATTAACAATCA 3747511 37 100.0 33 ..................................... TTTAATATCGTACACCTGACTCGCACAAGTTGC 3747581 37 100.0 33 ..................................... AGTAGTAAATGAATTACAAACTACTTTTTTCAA 3747651 37 100.0 33 ..................................... CAAAATCTTTGCAGCTACTTCGTTTTTAAGTCT 3747721 37 100.0 34 ..................................... TTGCTTTCTGACCCTGGTAGCTGCCCACCTTGAA 3747792 37 100.0 38 ..................................... AGCCAGAGCTAAATCGTTACTAGCTTTATCAATTGCAA 3747867 37 100.0 36 ..................................... AAGGATTGCAACCTTAACAAATAATCCCTTTGCGTG 3747940 37 100.0 34 ..................................... AATTCCTAAGTTTAATTCAATATCACAGCAATAG 3748011 37 100.0 35 ..................................... TTTTGATAATGACTCTATTAATATACGTTCTTTTG 3748083 37 100.0 33 ..................................... AAGATTATTGGCTGCTGCCGAAAAAGCGGAAGC 3748153 37 100.0 35 ..................................... AAGCTTTGCGACTTCATAACGCGCGCTTCTGTCAC 3748225 37 100.0 36 ..................................... CAGAAAATTCAAAATCACGGCGTTTTAATTTTTGAC 3748298 37 100.0 34 ..................................... TTCTAAATGCTACTGCAATGGCAAAAGCTTGTGA 3748369 37 100.0 34 ..................................... TATGCTATTAACCATGAGAATGGTGGAGTACTGG 3748440 37 100.0 34 ..................................... TTGTATCGTATTTGCAGGCGCCAAAGCTCAGGGT 3748511 37 100.0 34 ..................................... ATAAGTGTTTCCAGCAACTAACTGAGATTTGTTA 3748582 37 100.0 39 ..................................... TTAACTGATTTCTTCCAAGCCACATACTCTTTAGTGTTG 3748658 37 100.0 34 ..................................... GTGCCTTTGTAATTATCTTATCTGGTTGATTTTT 3748729 37 100.0 40 ..................................... AGTAACCTTCGTTGGGCACAAAAAATATATGATTTATTGA 3748806 37 83.8 0 ..C.T.....C............GT...........A | ========== ====== ====== ====== ===================================== ======================================== ================== 24 37 99.3 35 ATTGCAATTTAAAATAATCCCTAACAGGGATTGAAAC # Left flank : TATGAGCTTATTGAGTCAGATGTATAATTACTGCTGATAATTACAACATTGCTCTTGGAACTGTATACTTAGACATCCCTGCCCGTTATATATTTAGAGCATCACACTTGGAGTTTATTTGGCAACTAGTACTCACTCTAACTTTATTGGCGCCGTATCGAGTACTCATTATGCTAAACTACGAGCGCGTATCGGTGGTGAAATGCCACGGGATAATACAATCTTCTTTGCTTGATATTTGCTAGCTAGTTGCGCCAACCTGTGGGTGTTGAAAAAAGTATGCTAAATTCAACGGCTGAATTATTTACCCTGTCTTAGTTTCAGCTATTTTTTCTCAACTTAAGGTTGGCGCAACTCTTGAAAACTGCTCTAAATATAGCTTTGAGCTATTTTTGGCTCAGATCACTATTGACAGACAATCGGCTGAAATTGTATTTTAAGATTAGTTGGCGCAACTGAACCTTGAAAACCGAATATGGTAATGCTTCTACTGTGAGCCA # Right flank : ATAAAGTAGTTGGAACGGCTACTGGTTTTGAAGATGTTGCTCAACAATAACTCGCCATGCTTCGGTTGGTTCGCTAATTGTTTGTAGTACTTGCTGACGCATCGGCGCCTCAAGCCCACACGTTTAGCTAACCACCTTACTTATGGATATGACTATATAGACGATAATAGAGTGTTTAAAGCAATTAAATTAACTTTCCAACAATACTCACTTTATGTGCAGCAAATAAACGCTTACCTCGTTTGCTGGAAGCATACTAAAAACTGCCACCATTAGTGGCAGAAATTTGTAGCGGTTATAATTATTACAAGTACAAAATCTTAATTACGATGATTCGGTTTGAATATTAGTCTCTGTATTTTCTAAATGGTATTTAAATAAACCATCTTGTGGAAATCTAATTCCAGCCCATTATATATTTAGGGCACCTTGCCCGTTCAGTACACAGAATATCACACTAATAGTTTATTTATAAATTAGTACTTACTTTAACTATATTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTAAAATAATCCCTAACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 3760621-3764239 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3760621 37 100.0 38 ..................................... CAGAGTTGTCTCAAATTTTAGGAAATTTCAAATATTGC 3760691 36 97.3 36 -.................................... CCAATTTTTCCATTCGTTGACACACGGCTATTATCA 3760764 37 100.0 35 ..................................... CGGGTATCCCAGGTTTACCCAAAGCTTCTATAGCT 3760836 37 100.0 35 ..................................... AAACCAACACTAGCTAAGTCAGCTTTTGAAATTAT 3760908 37 100.0 34 ..................................... TTACATCAACAACGCCAGGAACAACGCCAGGAAC 3760979 37 100.0 35 ..................................... ATTTATAATATTGCACCTCGCACGCGCGGGGTTTT 3761051 37 100.0 36 ..................................... AATTGGATAGCCCCTAAATCGGATAAGTCTATCGTT 3761124 37 100.0 34 ..................................... GCTTAAGCAGAGTAATAGGGATTTAATTCAAAAG 3761195 37 100.0 35 ..................................... TCACCAGAAATAGAATGTAGCTAGTCATGGATTTA 3761267 37 100.0 36 ..................................... AGATAATGTTTCTTCTTCTGAATCTGATGTGTTAGA 3761340 37 100.0 36 ..................................... AACATCATTGGATAGAAGCACGCGTCTGGATAAGAT 3761413 37 100.0 34 ..................................... CTAAATTTGTTGTGCGCGGCGCGTACAATGCTTC 3761484 37 100.0 35 ..................................... ATGAGGTGGTATGATGTTGAGCGACCAGCATGGAT 3761556 37 100.0 33 ..................................... ATATATGAGATAGTTGACGCTGTAATTGAGTGG 3761626 37 100.0 37 ..................................... CCTCCACCTTTGCTTTAAGTTCGGCAATACGCTTATC 3761700 37 100.0 34 ..................................... ATTAGTGCTGATGTAGATGCTAATCTTGAAAAAG 3761771 37 100.0 36 ..................................... GCGGTTTGATACAGATGCTTTTGCCAAGTCATCAAT 3761844 37 100.0 34 ..................................... ATCAACGTGCGGTAACTCGTCAGCTTTGTTTAAA 3761915 37 100.0 34 ..................................... TGGGAAAAGCTAACAATAGCGACTCGGGTGGTTA 3761986 37 100.0 34 ..................................... AACATTACTATATATATAAAAGACTACTTGATAT 3762057 37 100.0 37 ..................................... GCTTCGTACTGCGATTATTCAGCAAGGTTATGTAAAT 3762131 37 100.0 35 ..................................... AGTAGAAAGTGACAAAGTACGCGCGGAGGCTCTTA 3762203 37 100.0 34 ..................................... TTGACTCGTCAATTACAGGCATAGGCGCACTTCG 3762274 37 100.0 33 ..................................... CGACTTGATAAAATTGATAGAATAGAAAATCGA 3762344 37 100.0 35 ..................................... TCTTCACCATTTGGGCCACGTTCAAGCCCTGGAGG 3762416 37 100.0 35 ..................................... TCCCTACTTTTGCATTTAGAGGTACTAATAATACG 3762488 37 100.0 34 ..................................... GAGCATCACTGAAAACATCAACGAGATTAAAAAA 3762559 37 100.0 39 ..................................... ATCCATAATTTACCCATTGAAAGATAGGGGTGATTAAAG 3762635 37 100.0 33 ..................................... CAGGGGTGATATAGAAAATATCTGCACGAGTGC 3762705 37 100.0 33 ..................................... TGGACAATACAACGAATTAAATTTTGGGGGATT 3762775 37 100.0 34 ..................................... GGAGATTGATTGTTCGTATTACTAAACCCTTCTA 3762846 37 100.0 37 ..................................... AACTTTGTAGCGGCGCCCGTCCGATACATAGCGAATA 3762920 37 100.0 33 ..................................... AAGATGCTTCGAGAGAAACTGAACGACATTTTG 3762990 37 100.0 33 ..................................... AGAACATCCTTACTCATACAACAGGCGCCACAG 3763060 37 100.0 35 ..................................... CAACTGTGATGCTTAATTGGGACATGCCTGTACTG 3763132 37 100.0 33 ..................................... GTTTATGATTCACGCAAAGTTGGTGGTGGTGAA 3763202 37 100.0 36 ..................................... AGTATTTCCATAGTGCAAAGGCTGCCAGCATACAAA 3763275 37 100.0 34 ..................................... AAAAAAGGAGAGTTGTCGGCTTTTTGGATATCTC 3763346 37 100.0 33 ..................................... TTTTGAGCGCATTGTTTCTATTGCTCAGGAATA 3763416 37 100.0 35 ..................................... CCAGATAACCAGCACTTTAGATTCGTTTGTAATGG 3763488 37 100.0 34 ..................................... CCAGGTTACAAGAAATCAAAAAGTTATCAAATTA 3763559 37 100.0 35 ..................................... AGAGATGGTGGAGTAAAAGAAATATACTATGGTAA 3763631 37 100.0 33 ..................................... AGCAAGTAACCCCGCGCATAGGGCACGGTTGCG 3763701 37 100.0 37 ..................................... AAGATTTAGAGCGGATATCACAGGAGAGCAATCAGGT 3763775 37 100.0 35 ..................................... TACGAACGCTCCGAGAGCGCGTATTTTTCCGGTGG 3763847 37 100.0 35 ..................................... ACGCAGGTAAAACACAATGCGTAGTAATAAATGAT 3763919 37 100.0 34 ..................................... CTAAGAATTGTTGAGTATCGCTATGCAAATATTT 3763990 37 100.0 38 ..................................... CTAGCTACTATTGGAGTAGCAAGTATTAATAATGATAA 3764065 37 100.0 37 ..................................... ATCTTCAAAGGCTATTTCAGCATAACGAACTGTGTAG 3764139 37 94.6 28 .......................T............G GGAAATTGGCTGGAGTCACTATATAGCC 3764204 36 81.1 0 ..........-T..........TAA.......T...G | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 99.5 35 ATTGCAATTTCAAATAATCCCTACCAGGGATTGAAAC # Left flank : AGGCGCCGTACTAAAATCCATAAAATTCTAAAGTCTTATGGACAGTGGATGCAGTATTCTGTTTTTGAGTGCGATTTGACCGACACTCAGTATGCTAAACTACGAGCGCGTCTCTCCAAAGTGATCAAACCAAAGGAAGATAGCATTCGTTTTTATACCCTCTGTGCTTGCTGCCAACCAAAAGTTGAGCGTATTGGTGGTGAAATGCCACGGGATAATACAATCTTTTTTGCTTGATACTTGCTAGCTAGTTGCGCCAACCCGTGGGTGTTGAAAAAAGTATGCTAAATTCAGCGGCTGAATTATTTACCTTGTCTAGGTTTCAGCGATTTTTCCCCAACTTGAGGTTGGCGCAACTCTTGAAAACTCCTCTATATATAGGTTTGAGCTATTTTCACTCAGATCACTATTGACAGCCAATCGGCTGAAATTGTATTTTTAGATCAGTTAGCGCAACTGAACCTTGAAAACCAAATACGGTAATGCTTCTACTGCGAGCC # Right flank : GCAGGGAATAAGGCTAATTTTTAGTCCTGCTTTCAGCAACATATTTTTATGGTAAATAAAACACCAACAGTTGCAGAATTGAGAGAACTTTCTTTGCGACTTCCAGAGAACATTCCGTATGTTAAAATGCTAGTTTTATTCGGTTCGAGAGCTAGAGGTGATATTCATGCTAATAGTGATTGGGATTTTGCTGTAATTTGTGATGAGAACCAACGTTTAGATTATGTAAAGGATAATCCTTTTTTGTGGTTTGAGCTACCTGCAAAAGTTGGCGAGATTCTCCAAATCAATAGCGATATTATAGATGTGGTAGAACTTGATCATTGTTCGCCATTGATGGGTTATCATGTAGCCCGTGATGCTAAGGTTTTATATGAAAGTAAACCAGAGAGTTTTCTTAGATTTCAATGCAAAGCCTGGAAGATTTATGCTGATACAGCAAAATTCCGCAAAGCTGAAAGAGAATCTATAAAACTCTGGTTGAATAAAAGAGGGTTATA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAAATAATCCCTACCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 5414458-5414866 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5414458 37 100.0 38 ..................................... ACTTAACTACCATTACTTTAGAACCAGCAGATGATAGT 5414533 37 100.0 36 ..................................... CAGCAACCTCCCTCGCCACTTCCAAAGGCGCCTTCT 5414606 37 100.0 36 ..................................... GATATTTTATAAATTGATATTTCTTACTCGTATTAT 5414679 37 100.0 37 ..................................... GAACTACCATCCATCTGATAAGGTTTAAATTTATCAG 5414753 37 100.0 41 ..................................... CCTGCATCATATGTATCCCACGTCAACCAATTATGCTTGGG 5414831 36 75.7 0 .........................-.CA..AAGCCA | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 96.0 38 CTTGAAACCTTACGAATCCCGTCTTCGGGACTGAAAC # Left flank : AAAGCTTCGCACTATAGAACTACATCCAGAAGCACAGAAAGCAATAGCTCAAAGTTGGCGAAGCATGATAAAATTTTTACCTCAAACCTTACCCTTATCACAACCAAATTTAAAACGTAACCTCTACCCGCTCAAAGAACTCGACTTAAACAAATTTGCAAACGACGAAGTAGAATACTTCCAACTATATCTATTAATAGTCAGGGCACTGCGCCTATGCGACCAAAGGGCTGTACAATTGTTACATTAATCTAGACAAAAACAACAACTCGCCTTATTATTAAACAATCAGCTTGATGTTTCGTAAACCGAAGCGAGGTCAAAAACCCTAGGGGTTTCACGAAATTGCCTATAACCTAGACAAGATAATAATCACAGCATTTACAGCTTTGCAATAACTGCAAATAACTCTCAACAAGCGCGGCTGAAATCGACTCAATTTAGGCACTTACGAAAATCCTTTCTGGAATCCTTACTCTGTAACCTTCGTAGCGCGCGGC # Right flank : ATTTTATTGGTGATTGGTCAGACCCTTTGTGTAAATACTCAGACGCAGCAATGCACAAAAGTTGTTTTCTTAATTGGGATATGCGAGAAACATTTATTGCTAGATATAATGAAGTGATGAAATCGTATAGAGCAGAAGATTGGGAAGTTAGAACTTATCTATATATGATGCCTGATGGTAGTATTGAACAACGAAAACACGCGGTTTAAATAGAAGTTAAACAGCGTAGCAAGTCAAAAATAAAACTATTGTTGAGTACGCACTGTGAGGTCAAATAAACCAATTAGTGTAGCAACATATCAAGTTGTTTAAACTGTACCGCAAGAACTGCAAAATCAACTTCCCTCTTCTGAACAGGTATCAAAACTACTTGGAAGTATAAAGTAGAAATATCCGTGTATATAACTTAGGAGTTAGGAGTCAAATCGCGTTTTACAGCTTCGCAAATAATCCTTCGTAAATACTTAACTCGCTCCTCCGGCACCAGTGCGTGCAGGGTA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTTACGAATCCCGTCTTCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 5424948-5423750 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5424947 37 100.0 34 ..................................... GTGCAGAGCCGTACTTTGTAAACTACAGATAACA 5424876 37 100.0 36 ..................................... TTATTTGCTTTTGATGATTGGGCTATCGGCAATCAG 5424803 37 100.0 36 ..................................... AAATGGCATCGGTATATGGAATTATCTGTTTGGAAG 5424730 37 100.0 35 ..................................... CCAATTACAGTTCCGCTTTGCAAGGTTAAAATACG 5424658 37 100.0 35 ..................................... GCGAGCGTCTAGGGGCGATGTAGAAGCTGGGAAAC 5424586 37 100.0 35 ..................................... CCACGATGATAATAGTGGTTAATCGGGCTTTGTAT 5424514 37 100.0 35 ..................................... TTGGAACCTCTTACTAAGTTTGACCTTCAGTTAGA 5424442 37 100.0 36 ..................................... CAGGTTTAGTATTATCAATCGGTTGCCAATCAAAAC 5424369 37 100.0 35 ..................................... CTAGATAAGTCTAGTGATTGGGTATTAGTAGATGA 5424297 37 100.0 35 ..................................... TGCGCGATTACTCCACCTGCACTAGCTTGTAATCT 5424225 37 100.0 36 ..................................... TGACTGTAAGTTTTGGCGGGCCAGATGCGTAAGTAC 5424152 37 100.0 38 ..................................... CCATGTGATAGTATAGTTGCCTAAAAGTTAAGTGTTAT 5424077 37 100.0 35 ..................................... TTTTATCGATAGTGTTTTTCCTTGCATCGTTTGAT 5424005 37 100.0 36 ..................................... AAGGTGGAGACAAGCTTGATGAACAAGGCACGTGGG 5423932 37 100.0 36 ..................................... TCCACTGTTAAAATTGGTGCAGGATATTTTTGGGGA 5423859 37 100.0 36 ..................................... GTAAGTGTCGTCAATGCGGCTTGCACCGCAATAGAA 5423786 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 100.0 36 GTTTCAGTCCCGATAACGGGATTCGTAAAGTTTAAAG # Left flank : TCAGCTACCACTTTAACTGCATTTTTGGTAACTTCGATATCTACATCTTTAGCTTCAATACCAGGCAATTCTAATTTTAGGTGTACTGCTTCCGAGGTTTCATGCAGTTCCGCAACAGGAGTTCTAAATGTCGGCGCCTGAAGTTCTTGAAACAAAGAATCTAATTGGCTTGTAATTGCGTTCATTTCATTCCAGGGATTGTAACATAATAACATTTTGCGTTGCTCCTTTCTGCTTGTGTATTAATTAATTAGTTTGGTATATCGTTTCGTATGTCTTTATAGTAATGAAGTTTAAAATGCTTGGAAATAGGGTTAATATTACTTTTATATTAATGAAAACCGACCGTTATTAATAGGATAATTAGGAGTCGTGTAAATACGAAAAATATAAGTACGGTAAACCTAACACGTAATGTATTTCTAATATGGCGCCTTGCGATATCAGGATTCGTAAGTTTTAAAGCCAGCAGCACATCCCAGTTCAGGAATTAGAGTAAT # Right flank : ATCGCGCGCTGAAACCCTTACAGGGTAAGCACTGCACAGAGGGTTTTCGTGAAACCTAAATTTGGCTTTATTTCAGCCGTGCTTATTGAGACTAATTAGCACTTGTCTCAATATTGAAAATGCTCAAACTATTATATTGTCAAGGTTCTGGCGTTTTTCGTGAAACCCCTAGGGTTTTTGCCCTCGCTTCGATTTACGAAACGTCAAGCTGATAGCTTAATCATAAAACGATTACTTGTTCTTGTCTAGGTTTTTCTGAGCCATAGGTAATGGTTCGCTTTACAGACCCAGCGTCCAATACATATACTCGCACGGAGTCTTCATCGGGCTTGATTAATTTTTCTACTTTTATTTGTAGCTGAGTAAATTTTACCGCAGTTAAGAAGCACTCGAATACGCTGTATTGTGTCCATGTTCCATAACCAGTGAGCATTTTATGCAAGCGAGTCCGGCGCCTATTAGCTGCTTTGTTATCTGGTAAGTCGTAAATAATTAGATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGATAACGGGATTCGTAAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 5 5744731-5741953 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5744730 37 97.3 32 ....................................G AGCAGTCTTCATTGACTTCGAGAAGGCGAATT 5744661 37 100.0 34 ..................................... ATGGATTGCACACAATTAGCACTATTTACGGTCG 5744590 37 100.0 34 ..................................... ATCGTGCGTAACTCACTAGTAAAGGTATAGATGT 5744519 37 100.0 35 ..................................... TTTATGACAACATCCATCATTAAACCGATAACCGA 5744447 37 100.0 34 ..................................... CCAACCACTTTACCAATAAACGAAGATGGTGTAA 5744376 37 100.0 34 ..................................... TTGCAGCAAAGCAAGTTTTTCAACCTTTAACCAG 5744305 37 100.0 36 ..................................... TTCTCGGCAGCATTATCATCATTCATAACATCTTTA 5744232 37 100.0 38 ..................................... GCACTTGATGACCTCTAGATGAGTTCCCAATCGGTACA 5744157 37 100.0 46 ..................................... TCCCGTTATCTCAAGAGGAGAGCGATATAAAGGAATCTCTGGGAAA 5744074 37 100.0 40 ..................................... ATTTAAGCTAGAGATATTTGATGCCCTTGACGCGCTAGGT 5743997 37 100.0 33 ..................................... AAATAGGGTGGATGTAGCTCATTTGCTAATTTA 5743927 37 100.0 35 ..................................... GCATCTACGCGAGCATGAAATAATCATTGAACAAG 5743855 37 100.0 34 ..................................... TAGCCACTAATATCACCAACGTAGGTCAGATTGA 5743784 37 100.0 34 ..................................... TTACCAAATCCCACCAAGCATCTAAATCAATTTT 5743713 37 100.0 36 ..................................... GGAATTATTTTATTGCAACAGTGGATGGAATACTTC 5743640 37 100.0 35 ..................................... ATTAATGATAAGAGGTATAAAATTGGGTTTAAGCA 5743568 37 100.0 34 ..................................... AGCGAACAGCCTAACGTGGGAACACTATACTAAA 5743497 37 100.0 34 ..................................... TACATAAATCCTGCCACTGCTGTAAGCTGCACTC 5743426 37 100.0 34 ..................................... TTGGGCGAAATGTGTTTTAGAATGTCCGCACTCA 5743355 37 100.0 34 ..................................... AAGAGCGTGCAGTTCGAGTAACGAATTATGGTAC 5743284 37 100.0 34 ..................................... TGAAAAAGCTGAATCAATAGACGAACTAATTCGA 5743213 37 100.0 35 ..................................... CTAAGTTCATAAACCTCTATCTCCATATAAATCAT 5743141 37 100.0 37 ..................................... TTCTGATGCAGCAATCCTTGGTGATTTGGTAAAGAAC 5743067 37 100.0 33 ..................................... TTTTTCCCCACTTTCAAATGAAGAATTAAAAAC 5742997 37 100.0 35 ..................................... CTTCCTGCTGCATACCATACTTAATACTAAGTTCT 5742925 37 100.0 36 ..................................... AACCTTATATCCTTGTTATGCTCTTAATCCTGATTC 5742852 37 100.0 37 ..................................... CACTCTGTAACAGGAGTGGATTTTTTTACTGTGAAGA 5742778 37 100.0 34 ..................................... GAAACTCCCGAACAGTTCATGATATTAGTTTTAG 5742707 37 100.0 34 ..................................... AGCAGAACCAATACTATCATGAAAAGCTTTTTGT 5742636 37 100.0 36 ..................................... GATTAGCCTCCGCTTCTGTCGCTGGCACAGTGGCAT 5742563 37 100.0 33 ..................................... TTAATTTCAATCAAAGCAGGAACCAGTGCTTGC 5742493 37 97.3 35 ............................A........ TGGCTACTATGCTTAGAGGATTTTCAGCCAATGTA 5742421 37 100.0 36 ..................................... ACCAGCTACCCATGAAATACATGCAGCAGTTGGCGC 5742348 37 100.0 34 ..................................... CCCACGGTAGTAATCTACCACGACGCCCTAACAT 5742277 37 100.0 35 ..................................... TCCTACTCTGATTGGGACAAGGGGTATCAGTTCAA 5742205 37 100.0 34 ..................................... AGACATTTTAGGTGATACCGCAACTCGTAATCGC 5742134 37 100.0 35 ..................................... TTTTCTTGTGGTATGAATGCTGCTCGCTTTTTAGA 5742062 37 100.0 36 ..................................... ATGGCTTTATATCAACGTGGAAGCGCTCTTACTCCT 5741989 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 39 37 99.9 35 ATTGAAATTTAAAATAATCCCTTTAAGGGATTGAAAC # Left flank : AAACAGGTGAAGGAAATCGTACAACGAACCGTGATTGTGCGTGGGTCTAGGAGTCCAGATTTTCCGAGATTTTTTGAACCGGCAAGTAACATATAAAATCATAGGAGAGGTTGAACCAGAAGTCATCAAACAAGTAAACGCAATAGCTGATTTTGCGCTATACGCAGGAGTCGGAAGAAAAACACCAATGGGAATGGGAATGGTACGCAGGCAAACAAATTAGATAGCATTTACCTAATTTTTCCTATATGACCGCGAACCTACTGGTGTTTTTTTCACGTCACGTCAATTTATCCTCGAAACGCCTATCCAGTCAAGCTTTGAAGAATTTGGCGCCTGACAGAGGTTCGCGGTAACTCTGAAACCCCTATCAATTAACCATTCCAGCAATTTTAGCCTATGCTCATATTGACACCTCAACATCTGAAACGCTATTATTACTCTAAGTTCGCGGTACAGAACCTTGAAAACCAAATACAGCAAAGCTTCCACATTGAGCC # Right flank : TTATTAATAAAGCTGGTATTACAAATAATAACGCGCGCTGGTGCCAAAGCGTGAACGTTTAGAACTTTCGTTTATGGGAGTATAATATTCCTGAAATTAGGAAGTTCTTGCTTAAATTCCAACTAACATCGGCGAGTAAAGTGTTAGCGATTGAATTTGGGAGAATATCACCAAAATAGTTGACTAAACCAAGCGATACGTTACCAAGATTTGCTCTGGCGCCTAATGTAATTGAACTACCCGGTGATTTTACTACAAATTGGTCAATTTCTGCTTTACGGTCAATGGCATAGTTCAATCCTGTTGATAAGACAAGATTAGAATTTTTCCCTAAGCTGATTTTCTTGGAAATGCTACCTGATACTTGACTATAGTAATCATTATCTGGATTTGTATAACCAATGGCGCCACCAGAGAAAGTCCAACCATCGTTTGTGTACCTAGTAAAGTCTGTACCAAGATAAGCGTTGATTTTATCTCCGCCAATCATACCACCCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTAAAATAATCCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 6 5753692-5749233 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================== ================== 5753691 37 100.0 33 ..................................... CGAGAAGCTGGAGCAATATCACTACGTCCACTA 5753621 37 100.0 33 ..................................... AACTAGCGACTGTACTAAGTTGAGTGAAATTAA 5753551 37 100.0 34 ..................................... TCCAAGCTATTACGGGATAAGATGTTATTGTTGC 5753480 37 100.0 35 ..................................... TCCATCAAGGATGGCTACTGAAGTAGCTCCACATA 5753408 37 100.0 36 ..................................... TATTTTTTTAAATAATTGCTTGACAAGATGTAAGAA 5753335 37 100.0 36 ..................................... GCTTGGCTCAAACAACTGAGGTAACAAAGCAGTAAC 5753262 37 100.0 35 ..................................... CGATAGGTAAAACTGGTCCGCGCGGTGAAATTGGT 5753190 37 100.0 37 ..................................... TTCAAGCAAAATTTTTGTGTTTTTTGATATAAACAAT 5753116 37 100.0 34 ..................................... TAATGTGGTGGATTCTGACATTAAAGTTGCTGGA 5753045 37 100.0 35 ..................................... TTACGACCATAACTTTAGAGCCGCTTGCTGATAAT 5752973 37 100.0 35 ..................................... AATTTTTTACCTTGCTTGATATCTCTGGCAAGAGA 5752901 37 100.0 33 ..................................... ACATTATACCCTGCCCTATATATTCTTTGATAT 5752831 37 100.0 62 ..................................... AAGTACAACGTAGGGAAGAACAGCATGAACTAACACAATACATTAATGACATAGAAGCTCTA 5752732 37 100.0 35 ..................................... AAGTACAACGTAGGGAAGAACAGCATGATTACAGG 5752660 37 100.0 33 ..................................... TTTACCACGTTTTGAATTGACTAATGCAACCTC 5752590 37 100.0 35 ..................................... AAAGTAAGGCATTAATTACCCCTTACGTAAATTTT 5752518 37 100.0 33 ..................................... TTAATGTTAGTAAATCGCGCTTCTTTTGCAAGT 5752448 37 100.0 33 ..................................... CAACTTTTACAGGCTTATGTTTTTTCTTACCAT 5752378 37 100.0 34 ..................................... TCATGATGATTGTCAGCAAGAAAATTGAGTAAGT 5752307 37 100.0 35 ..................................... GCTTAACTAAGTACTCTAGAATCGTATCCGCTTGC 5752235 37 100.0 34 ..................................... TTTTACTGCTTGAACTGTTCGCTGTCTTGATAGC 5752164 37 100.0 36 ..................................... ACTTAAGCAGAGCAATAGGGATTTGATTCAGAAATA 5752091 37 100.0 33 ..................................... CCTATTGGGCTATCAAAGTGAATGCAGTAGTAC 5752021 37 100.0 34 ..................................... TTAGAGGCACCCGAAACAAAATACATTTTCACAG 5751950 37 100.0 35 ..................................... TTCAATCACTTTTTTGCGCGCTTGTTCCGCTTCGA 5751878 37 100.0 41 ..................................... ACTAATTCAATAGAAGGAGGCATTGACGGTAATGATGGCTC 5751800 37 100.0 35 ..................................... TTGTAAAATACATTCCAGTACTTGGCTGGTTAGTA 5751728 37 100.0 37 ..................................... TTGCTGAGGCGTTAACAAGACTCAATAATGCAGCTAA 5751654 37 100.0 36 ..................................... CCTGGCGCCACTGACTTAAAATCAAGGCAAGGACAT 5751581 37 100.0 36 ..................................... TTTATGTACATCTACAGGATAATCATGCACTTGTGA 5751508 37 100.0 35 ..................................... GCAGCTGTTTGTATGAAGTCCTTTATTAAAAATAG 5751436 37 100.0 37 ..................................... AATAGTTGCTTGCTTTTCATTGCCTAAAGCATTTGAA 5751362 37 100.0 35 ..................................... GAAAACACAATCAATCTCCCTAAATAAGTAATTAC 5751290 37 100.0 41 ..................................... ATCGCTATTATCCCATGTTTCTGCTGATTTGTACCATCCAA 5751212 37 100.0 33 ..................................... GTACATTCCAATATCATCTGCAAGTTTGGTATC 5751142 37 100.0 34 ..................................... TCGCTTTATCTTTGTGCGTTAGATAATCATCGTA 5751071 37 100.0 34 ..................................... GAGTAGGGTAGCGAGTAACTCAAGTTGCTTAATA 5751000 37 100.0 34 ..................................... GGTAGCTTGGCACTGTACACAGAGGGTGTGTTTA 5750929 37 100.0 36 ..................................... TTTTCTTGGACATGCTTAAAACAAGTTCGTACATGA 5750856 37 100.0 36 ..................................... ATGAAGTTTGGGGTAAGGAGCTAATTCTACCGATGC 5750783 37 100.0 38 ..................................... TTTGCAATTCATAGGCAACGTGCCAAGCGATATTTAGA 5750708 37 100.0 36 ..................................... GTATCTGTAAGGATTGCGCTCACCTTGGATCAAAGT 5750635 37 100.0 35 ..................................... TTAAAATTATCATCGACTCGCTATATCGTAGTTCA 5750563 37 100.0 34 ..................................... TTTGTAGCTCGTCCATACTCGCCATTTAATAGTA 5750492 37 100.0 37 ..................................... CTGTGGAGCGAAGTAGTGCAGTATTTAAATAAGTGAG 5750418 37 100.0 35 ..................................... GCTATGCGCCGACTCTCTTAAGAGTGCGTAATGTA 5750346 37 100.0 33 ..................................... TCTAAATAAATTGGTAAAGAAACTGCCAATTGA 5750276 37 100.0 33 ..................................... TGCAAACGCTTTAGTTTTTAACAATGCTGCGAG 5750206 37 100.0 38 ..................................... ATGCTGGACGCGCTGTTTTAATTGGCGCTAGTCAAGAA 5750131 37 100.0 36 ..................................... ACATTATCGGGCATGTAACTCATTTTATCGTCTATG 5750058 37 100.0 34 ..................................... TCAGAAATTAGCCTTCATAATCAAGACTCATTAT 5749987 37 100.0 35 ..................................... AAAACAGAATCTAAAACTGAAGTAGTGGCGCCACA 5749915 37 100.0 35 ..................................... TACTGGATATGATAGATTCTTCGCGCTGGGATATC 5749843 37 100.0 34 ..................................... AAGCAATTAACTTGCTCAACTGAACACTACTATA 5749772 37 100.0 34 ..................................... AGCAAATGAGGCTGAAGTAAAAATGGCTTATCGG 5749701 37 100.0 39 ..................................... AAACTCTCTTTTAACTGACTCAACTTTACCATCAACAAT 5749625 37 97.3 36 ..................T.................. TACCTTTACAGCCTATCACCCCCGCTTCAACACATT 5749552 37 97.3 34 ..................T.................. GAGATTCTTCGGACAGTTACACGTTCGCGTAAGA 5749481 37 97.3 36 ..................T.................. CAATTAGAAGTAGATTTATAGTTGAGGGCGTGGGCA 5749408 37 100.0 31 ..................................... TTCGTAGCGACCACCAAGCGCAATGCTGACT 5749340 37 100.0 34 ..................................... TGATGACGATTTTCGCACTTTACCCGACTATTAT 5749269 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================== ================== 62 37 99.9 36 GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Left flank : CTTCAAAGGTTATAGTGCTGCACGCACATTCAGGAGGCGCCACAATTACACAATCGGTCATATACTGCATAACTTTGTGAATAAACCAGACACTCATATTTAATAAGTAACCATGTTTGTAGTTATATCGTATAATGTACCCTCAGACAGGCGCCGTATAAAGATTCATAAAACTCTCAAGTCATACGGACAATGGATGCAGCACTCTGTATTTGACACAACAGTATTCTTTGCCTAATTTTTCAAACAAGACCGCGAACCACAGGGTGTTTTTGAAATGCTTGATTAATTTACGGCTAAAACGCTTACCCCATGCAGTATTGAAGCATTTCAACCACAAAGTAGGTTCGCGGTAACTGCAAAACCCTTACCAAACAATCATTCCAGCGATTTTGACACATGTTCATCTTGACATCCTAACCTCTAGAAAGCTATTCTTACTTTAGGTTCGCGGAACAGTACCTTGAAAACCAAATACAGCAAAGCTCCCACATTGAGCA # Right flank : GAATACTTCAGCCTTACAAGAAGAATTAGGTATTGGCGCCTTGACCCCTCGTCAGTAGGATAAGTTTTTGCTACTTGTCGTCGCGTATTTGGCGGGTTTGAGGCGCCCCTTGACCCCTCGTCAGTAGGATAAGTTTTTGCTACCTTTAAAATTCGGGTTTCTCGCTTTCGGCAAGGAACCCAACTGTTTAAAGGTACTACACAGTATAATTATCTATATAACAATACTATATTTACTAATCATCTTTATGAATAAACCAATCCCTGAAGAATACGGAAGTCTTTTATTAGAAGTAAAGCAACGTATTCGGTCTGCTCAATATGAAGCATTGAAAGCTGTAAATAAAGAACTTATTGCGCTTTATTGGGATATTGGCAAGATAATTGTTGGGCGCCAGCAGAGCAATAGCTGGGGAAAATCAGTTGTTGAACAGTTAGCGAAAGACTTACAAACTGAGTTTCCTGGGATTAGTGGATTCTCTGCTGCTAACCTATGGCGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 7 9201745-9201505 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 9201744 24 100.0 47 ........................ AAGGCAAGTTATAAAGAGTGGGGTAAACCTCGAACGTGTTTTGACCT 9201673 24 100.0 49 ........................ TCAGCAGAGTAAATCGTTGATGTGTCAGCAGAAGAAGATGTTTTGACCT 9201600 24 95.8 47 ...............A........ TATGGCGCCAGTTTAATATGTCGCGACGGTCAATTAGTGTTTAACCT 9201529 24 83.3 0 CT.............A....C... | T [9201524] ========== ====== ====== ====== ======================== ================================================= ================== 4 24 94.8 48 TAGATACCGTAAGGTGTTGATCAC # Left flank : GCATTACATATAGTTTTCAAAACCTTACGGCATTCAAAGGCACTTACTCTTAGCCAGCTAGTAGAACAAAATCGTTATCGTTATATTGCCTTGTGGTTTGCTTTTGACTTTTAATTCAACCTAACTTTGTTTATCAGTTTTATACACCTTGAAACATTAGAACAAATTCACGCTACCAGATAGGCTATATTTGTGTCAAGTATCTATTTATTAAATTTGTTTAACGCCAGACGGCATCTGAGGTATTGAGCATACAAGGGTACATTGAACCTTGCAGCTGCTTGCACTTAGGCACTTCAACAACTTTACACCGTGAAAATGCTCAAAGCCAACTTTAGCAACTAGCGGCATCATAGGCTAAACCAACAATAACACGTTTTTAGCACAACATTTCACTTGCACTTTGAGCTAGCACAAGCGACTAACAGGTGCTTGCAAAATTCTTATAATGCTTGTATTGTAAGCTCTGTAGCAATTCTAAGATAATTAGAAAAATGCTA # Right flank : AGAGTATCTATCCTCTAAAAAACTTAATATGTTTAACCTTTGATTACTGTAATACCGATTTAATATGAAGCTGCAACTAATTAAATTCCCCCAACCTACCTTAATAAGGGGGGCTAAAGAACAATAATGTGCATCTTCATATAAAAATGGTATAAGGTGTTAATTATGTTTCTAATTTTCAAGTAATTAACCTGGCGCCCAAAATGTTTATCTTCTTTGATGCGTGATGCTAGAAGATTTTTCGCGCTTGTTGGGGATTTATGATGGCGCCACGCTCACGAGTTATACTTGGTAGGAGCGTCAAGTGCAACTCAGCAACTTATTTATTAACTTATGCCTCGTTGGTTTAACACTACAGGTCATTGCCGAGCCGACATTCACTACATGCTGTCGCCTACCAGTCGATTACCTGATTTAGAGGGCTTAATTGCTCAAGAAAATTATTTTGTTATCCATGCGCCTCGCCAAAGTGGTAAAACTACCATTAGCTGAAAAACTAA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGATACCGTAAGGTGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 9213162-9214485 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018255.1 Calothrix sp. NIES-4071 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 9213162 36 100.0 36 .................................... ATTAAACATTCAAACACTCAATTTAATAATGATTTA 9213234 36 100.0 36 .................................... AATTGTTCACGAAAATTAATGAACTATTTGAAGAAG 9213306 36 100.0 35 .................................... ACTTGTTAGATATTCCCGTTAACGAAGCAGCGTAA 9213377 36 100.0 35 .................................... AATACTGCTCGCTTTTTAGATATTGACCAGCTTGC 9213448 36 100.0 37 .................................... TGAGCAAGCAGTATTATTAAGCGGCGCCTTTGTATTT 9213521 36 100.0 35 .................................... TTGTCGCATCTTTCTCACCCAATCTTGCTGTTAGT 9213592 36 100.0 35 .................................... TTAGTACTATCGGTGCTAGTGTCGGTGTCGGTGTC 9213663 36 100.0 36 .................................... TCAAGTCTAAGCGAACACCATACCGAAATCAAACAT 9213735 36 100.0 36 .................................... TAAAATCAAAGACATCGTATTAAATAATTATGTAGA 9213807 36 100.0 36 .................................... CGTAGTAATCCCAACTTGGGTCAGGTGTTGATATTG 9213879 36 100.0 35 .................................... ATGTCGCGTAACCGCTCCACATGCGGCATCAAGCC 9213950 36 100.0 36 .................................... TATTTGTTGCTGCATTGCTGGGTGTATTACTGGACT 9214022 36 100.0 36 .................................... GCGCAAATAGCCTCATCGAGCGTAAGGCAAGACCGT 9214094 36 100.0 35 .................................... CAAGAGGAACACAACAAGAATTTGAATTACAAAAC 9214165 36 100.0 36 .................................... TCCAGCCATATATGGTCCAGTTCTTGGAGGGTTAAA 9214237 36 100.0 35 .................................... GCTAGAATCTGGATGGCTGCATAGAGAAGAATATG 9214308 36 100.0 34 .................................... AATGCACCGATTACGCTTACAACAAGTCAGAATA 9214378 36 100.0 36 .................................... GCTATGCGGAACGTGGGATGGATGGTTTTACTAATT 9214450 36 86.1 0 ..................C.T.CT...........T | ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 99.3 36 GTGCTGTAACCTTAGATGTCGTAAGGCGTTGAGCAG # Left flank : GTCAAAAACGATGGCGTAAAGCTTATAAACTCATAGAGGGATACGGCGAAAGAGTTCAATACTCAATATTTCGCTGTTGGTTAAGTCAACGCACGCGCGAAAAGTTACGTTGGGAATTAGAAACAATACTAGCTAGCGAGGACAACATCCTATTTATTCGTCTAAGCAACCGCTGTGTCGAAGATATCCCCAAATATAACCGCCCTGGAATATGGCAAAATCGAGACGAACCTTTTTTAATCGTCTAAAATTACAAGCACCTCTGAGTGTGAAACCAAAAAAGATACCTTTTTTACCCAGAAGACTTGTAGCAGAATAGTTTAAAGCCTTTTTAACTCTTTAGAGGTGCTTGCAAAATGCTGAAAGCCTTACCATTAGGAAATTATAGAAGTTGAATTTTTCTGTTTTTTCACATAACCAAGTGCTGTAATAGCTTTTTGCACCAGGTGCTTGTAAAATCGTCTAGGGAACTGCGCCATACAAGGATTTTGGAAGGCGCT # Right flank : TATGCTTAGTTAGAAGATTTAGTAAGCTTTTGCTCTATTTCTCTTTCAATTTCTTCTAACTCAGCAACCTTAGCTAGTAGCTGCTGTTTTTTAGCTTTCACCTTATTTAAGTGTCTAACCCAGTTGCTACCGTCTAACAATGACTGTACTATTTCTGTGAATTCTGAATCAGATACAGGCTTACCAGCAAAGGCTATACAATCTAGCTCATCTAATTCTTTCCAATATTGAATTTGTTCTGGAGTAGGTTGTTGTAAGTTTGAATCGTTAGTTGTTGACATTTTTGTTCACTAATTTAATTAAGTATTCAAATTACTGACGGCTTGCTTGGGTTATTAAAAAATTCCTACTTGCAGTTTCTGTCAGTATGAACTCTCCTGAACCGTTTGACTCTACAAAACCAATTTTTTCATAAAATGAAAATATGTACTTAAGCGACGCGCGCGGTGTACGTCGCTTAAAACACTCTATTGAACCGCAATATTACGGCTTAAGATGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGTAACCTTAGATGTCGTAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //