Array 1 441480-442831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIJ010000002.1 Listeria welshimeri strain FSL W9-1113 NODE_2_length_448257_cov_104.116199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 441480 36 100.0 30 .................................... TGGTGGTAAGGGAATATTTCAAGTTTCAAA 441546 36 100.0 30 .................................... AAAGTGACTAGTGTATCAGTATCTACTTCT 441612 36 100.0 30 .................................... TAATGTACCTGGTATTAAGGCTTTGGCTTC 441678 36 100.0 30 .................................... TTAGATACTGGGACAGAAGCAAACCAACTT 441744 36 100.0 30 .................................... ATTTGAAAATTTCACATATCTGGCAACAAG 441810 36 100.0 30 .................................... CATAATAATCATTATCTTCTCTTCCTCTAA 441876 36 100.0 29 .................................... TAGTCTTTTTAGTTCCTCTTTTGTGTCTT 441941 36 100.0 30 .................................... TAACATTTTATTGCAAGATTGGTTATCAAT 442007 36 100.0 30 .................................... CTGGAAACAGGATGTCCGGACGCGTTCTTG 442073 36 97.2 30 A................................... AGGATGCCAAGTTCGAAGTATTTATGCGTC 442139 36 100.0 30 .................................... ATACTCAAGAACCTGAAAATTATAAGTTAA 442205 36 100.0 30 .................................... AAGGTTCATTTCCGTATAACATTCCTCTTC 442271 36 100.0 30 .................................... CAATTTCCACAAACCCGACACATTTATGTC 442337 36 100.0 30 .................................... TTACAGAAATAGCTTCAAAAGAAGATGAAG 442403 36 100.0 30 .................................... TTAAGAGGTATTTTTCATGGAAGCAATTCA 442469 36 100.0 30 .................................... AGTGGAGGCTCTTAAAACACTTGAACTGTT 442535 36 100.0 30 .................................... TTCGCTCACCACCTCAATATCTTTAATTTC 442601 36 100.0 30 .................................... TTTTAGGGGCACTATTTTAGAACCTTGTTG 442667 36 100.0 30 .................................... CAAGTGATTCATTAGAAGACGCTAGACGCA 442733 36 97.2 27 ..........................T......... GAATATTCTCCCCCATCGCTAACAGGG 442796 36 72.2 0 ............CA.....C.....ATC.A..C.CA | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAATGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAATACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAAGATAAAATTCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACCCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 220396-222501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIJ010000001.1 Listeria welshimeri strain FSL W9-1113 NODE_1_length_1264895_cov_74.222231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 220396 29 100.0 37 ............................. GCATTTGTTTTTTACAGGTGATCTAAATAAAGCGGAA 220462 29 100.0 36 ............................. ACGCTTATTTGCCTTGTCTACAAGCGCAGGAACACC 220527 29 100.0 36 ............................. TTTGTTTTACTTGTCACTCCACATTTCTTTATTTTT 220592 29 100.0 35 ............................. ATGGATATTACACGTCATCCAGAAGAATATTCTTT 220656 29 100.0 37 ............................. CAGAACACCGTTTTAGCAGCTTTACCTCAGGGGGATA 220722 29 100.0 38 ............................. CAGTTTTTGCAAATGACAACATCTTGACCTGTTGTTTT 220789 29 100.0 36 ............................. TCAACTTGTTTGTGTAAGCTTTCATTGCTTCTTTAA 220854 29 100.0 35 ............................. TTAGGTTAACAAAATCCTCTTGTGAACGAACTCTA 220918 29 100.0 37 ............................. AAACAAAACATAAATGGGTGGGATGTTCATACATGGC 220984 29 100.0 36 ............................. TTCGTTAAAAAGAACGTCGATGACGATTGGCTGAGT 221049 29 100.0 37 ............................. ATTACAGCGCTTTGACGAACGAATAATTGACATTAAT 221115 29 100.0 38 ............................. TAGATACAAGAACTTAGCGTCTTCAAATTTAACAACGC 221182 29 100.0 35 ............................. AGCGTTTCCATCAAAAACAATAATTTCGTCATATT 221246 29 100.0 35 ............................. TATTTTTCAAAAATAGCTTTTAAATTCCGCATTTT 221310 29 100.0 34 ............................. ATTAGAACAGTAACATAGGCTTTGCTTTTACCTG 221373 29 100.0 37 ............................. AACATTCGCATCATTTGTATAACGTATTTTTACGTAC 221439 29 100.0 38 ............................. GAATATTATGAGTTACATTTAGATGAAATGCGACAACA 221506 29 100.0 38 ............................. GAAGAAAAAACTGCATTTTTTCAGCAATGTGCAGATAT 221573 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 221638 29 100.0 35 ............................. CGGTCCATATCAATAAATTGTAAAGTCGCTTTGCC 221702 29 100.0 34 ............................. TTTACCGTTAATGCAGATAATGACGGAAAAATGA 221765 29 100.0 34 ............................. TTGTTTAACTTTAGCTGTTGATAAAATTAGCAGC 221828 29 100.0 37 ............................. ATCAAATAAGATTCTTTTGAATTTAACATGTTAAATT 221894 29 100.0 37 ............................. ACATTACAAATAAGTATTTCCGCTCCCAAAAAGGGCG 221960 29 100.0 35 ............................. TATTCCAAGACTGTTTACTTGCGTTATGGTACATA 222024 29 100.0 36 ............................. GGTCATGTACTCATCGAAACAGAGGGCGCCCAGTTA 222089 29 100.0 36 ............................. AAACTTATTCACTTAAAAGAGCATATCAATCAACTT 222154 29 100.0 36 ............................. TTTCTCTTATTTCAGCTTCTGTGAATCTTGTTTTAA 222219 29 96.6 30 ............................A GTAAAAACCTGTGCTTGATCGCTCAGCTGC 222278 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 222344 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 222408 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 222473 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 33 29 99.6 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAACATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAGATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGATTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAAGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : CTCCTTCCCTCAACAATACACCCCAAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCAGCCCGCCAAACAGCGCTGCCACAATCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAACAATCCCCACACAAGCCCTACCGCTAAAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATAACGATGAAAGTTAAAATAAATGCTAAAATATTCATCTAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //