Array 1 56841-57966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEUT010000006.1 Rothia sp. ZJ1223 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56841 28 100.0 33 ............................ CTTGAAATTGTTACGAGAGACCGCAGCCGTCCA 56902 28 100.0 33 ............................ CTATGACCCTGAACTGAGGGGTTTACTTCGTTT 56963 28 100.0 33 ............................ CACGGGCATACCAGTGCGTGAGTGGTTGCAGGG 57024 28 100.0 33 ............................ CCATTAACACCGTAGGTGATTTCAATCGAACGG 57085 28 100.0 33 ............................ CGACCCTCTGGAAACTGGGAAGCCCAAGCCAGA 57146 28 100.0 33 ............................ CTTGGAGTTGTTACGAGAGACCGCAGCCGTCCA 57207 28 100.0 33 ............................ CCAAGGAGAGAGCCAAACACGGCGTTACCGAGC 57268 28 100.0 33 ............................ CCAAGCATTCTCCGCCGTCCGCCCCATGAAAAT 57329 28 100.0 33 ............................ CATCACAAGCGCCGCACGTTTCTTAGACGTATC 57390 28 100.0 33 ............................ CCCACTTCGGCAACACCGGCACATACTGGACTG 57451 28 100.0 33 ............................ CTTGCTTTGAACTCGCCTACGGGTAAGGCGAAT 57512 28 100.0 33 ............................ CGGTGACTAACAGTGCTGGGGCTCAGGTTGTAG 57573 28 100.0 33 ............................ CAAGTGGAGTTGGTTTTGCTCGGAACTCTTAGC 57634 28 100.0 33 ............................ CTGAATATCCCGCTGTGGAGAGATACGGGGCAG 57695 28 100.0 33 ............................ CCATCGCATACGAAAGCAAGAGCGATGCTCAGA 57756 28 100.0 33 ............................ CAACCGCCAAAACCCCCAAGTTACCGCGCTCGC 57817 28 100.0 33 ............................ CTGAAGAACTGGGACGCTACTGGCAGCAGGTGC 57878 28 100.0 33 ............................ CCTAGTAGAAACACTGGTAATGGAACACCCACT 57939 28 89.3 0 ....................A..A..T. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 33 GTGTTCCCCGCGTAGACGGGGATGAGCC # Left flank : ACTCAGATGAGGCGAAGGCACAAGCGAAAGTACGAGATACCGACGAAACATTAGAGGTTATCGTGGTGCAGGCTGATACAACGGGGGAGCAATACAGACCACTCAGCTCAGACTATAAAGGCATCTATTTTGATGTTGAAAGCCCAGAAAAACCCGACTGGAAACTCGCAAATATCTTGGCTGGATCGACCATTCGTTTACCACATCAGTTTGCAGATAACGGTAAACCGGCAGCTGAGAATCCTTTCGACAAAGCGCTGGGGGAACTGGAACGGAACTATATTCCCGGCTGGCAGCAACACTATCTGCTGAAAGACCAACTTACGTTAATGCTTGACGCCAATTACGAATGTTTGCTTGCAGGAAAGAAAATTCGATACTCCCAAGAGCTTGGATTGCAAGTCAGCAACAACGAGTGAGGGTAAACTCTAAAACGTGGCTATTGAGGCAAACTAAATAAATTAGGCTAGGTGAATAGGTGTTACGCCTAGTCACCTAGT # Right flank : CTGAGGGGGCTTCCGCCAAATCTGTAGTCAAATGCGTCCTGGCTCGCATTGCCTGAGGATGAAAACCCTCGACTTGGGCGGTATGCCGTCCCTCGTCCGCGTCTCGTGTGACCGCGAAATATCAGGTGTGACCGTGAAGAGTAATGCTGACCGTACATTTCGTGGTCAGCATTACTTTTGGTGGTCACCTCTTACCTAACCCCACTCGTCCTCACGCGCTGTATCGCGCTGCACCCCTGCACGTCCTCCGCCCCCTCCCCCCCCCGTGCTTACCACTGCCCGCTTTCTCGTTCATACTCTGAAATCAAAGTCTTGTGTGCTTGTTAGGAGGTTTTGGGGGCGTAAACTTTACATCTAACACCGCAGTAGATTTTGAAGGGAAACCATAATGCCAGAATTGCGTTCTCGCGCCTCTACCCACGGCAGGAATATGGCTGGCGCTCGTGCCCTGTGGCGCGCCACCGGTATGGGCGATGATGATTTTGGTAAGCCCATTATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAGACGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //