Array 1 101023-100814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOPK01000013.1 Acetobacter orientalis strain DsW_061 Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 101022 28 100.0 33 ............................ ATGGCGTCACTCATAGCGCCTTGGCTGCGCCTA 100961 28 100.0 32 ............................ ACAGAACAGGCAGATCAGCAGGCCGCTCAGAT 100901 28 100.0 32 ............................ ATACCAAAACCCAATAGGTTTGAGGCTCTAGC 100841 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : TGTGGCTGGCACCCCCCTACCCAGCCCTGTTACGGCCTGATAGAAAAACCACCCAGCACAAAGCTGTTGTGTAATGAAGGAGCACACCCCATGCAAATGACACTCCGCCTTGCCTGCCTTATTGGCATTGCCCTTGCAGGTGTGCTGCGCTTTGTAGCCCCACATTACCACCTTACGGCAGAAATTGTGGGGGCCGGGTTTTTAATAACCGCTCTGGTAGCCACCGTCATATTAGACGAAACAGCCCCGGCCGGTATTTCAGCCTCTAAAAAATAGCTACTTACCCTGCCCCAAAAGCAGGGGCTAACACGCCTTAAAACTGGCTATTCCGCCCAAGCCTAGCTACAGTGCCTAAACAAACCCTTTTTTGACCCTATTTTAAAACACCCCAAAAAGTTCTTTGAAAATCAAAGCCTTAAAAACCGCCCTCAAAAAAGGGGGCAACGCACTAAAACCCCTTAAGCCTTTGTTTTCTTAAGCGTATCTCTTTTTCCCTTCTA # Right flank : GCAATGACTCAAATCAGCTAATAGTCGAATGTACCTGACCTAAAGCTTAACAAAGGCTTGAGAAGCATAGAAAACTGAACAACACATACCTCAGCGATGTACACAATTTTTAAAACGACTACATTTTCAAGAGGGCACAAGCCCTTTGAGTTTTCGCATTCGTAAATACTGCTCTTAAAAGCAATTCTAGTCACTCCATAAAATTAATAAATATTTATTTGGATAACCTTATGATATCTCGCATTCTCGAAAGTCGAACTTCATTGCGAGGAACGATTACACTATGAAAACACGAAGTTACTTTATTCTTCTCAATATAAAAACAAGATAACACAAAATGCACAAAATATACATAAGTACGATAATAAAATTAGCGAAATATAAAACCCTTATCACCTTTTATGCAATTTTTTCAATAATTAATGGGCTACTTTGTATTACTCTCACTCCCCCCTTTCAGGTGGCAGATGAACCCAACCATTTCATGCGTGTATTACAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 85692-85304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOPK01000042.1 Acetobacter orientalis strain DsW_061 Contig_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85691 28 100.0 32 ............................ AATCACTCAAGAGTTTTTCAGCGTCAGTAAGC 85631 28 100.0 32 ............................ AGCAAGCTTTTTGCGCAGACTATACGTTTTAT 85571 28 100.0 32 ............................ TATTTGGCTTAACAGAGCGGCGGGTGCGTGCG 85511 28 100.0 32 ............................ TGCGCCACCAATTCAAGTTTCAGGAATTCAGC 85451 28 100.0 32 ............................ ATGTCGCGCCCGTTGCGCCGGGTACTGACACG 85391 28 100.0 32 ............................ CAAAACTCCCGCGCCACAGGGACTTTGCGGGC 85331 28 78.6 0 T...................T.T.T.TG | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : GGCTTATGGGGCGCTTTCTGTAGGCGAATTGCTTATTAGCGCGCTTGGCCTTGCCGTGGTGGCCCGCTATGTGCCGCTTAATATTGGGGCCTTTATGATGGGCAGCTACTGCGTGTCTAACGGTGTGGCTATGTACCTTGGCAGCATGGTGGCCAATATGGCTGCTGTAAGCGGTGCTGTTGGGGGCGAAACTGTTGCCGCAACGCTGCCTGTTTATGCCAGTTTGTTCCGCTCTCTCTTCTTTTTAGCTGTAGGGTGCACGGTGGTTTTTGTGGTGTGCCTGCCCTTTACACGGCGGTGGGACGCCCAGCACCATGCAGCACTTGGCATTAAAGCCAGTGCAAAGGGGTAAAGTTTACCCCTAAAATACCCCTTTTTTTAGAGCCAAAAATAATCTCTTTAAAATCAGATACTTACAAAACGGCTTGCAAAAAGGGGTAAAAGCGCCAAAATAGGCTACAAGACGCACAAAACTGCTCTTTTATAACCATATCAGTCTA # Right flank : TGTTGTTAGGGGCTTTTATTGTCTGTTTAGAAAGGTGTAAGCGGGCGAGTGGTGGAGCTGAGGGGAATCGAACCCCTGACCTCCTCATTGCGAACGAGGCGCTCTCCCAACTGAGCTACAGCCCCGCCAGCTTTATTTTGCGTGTACAGAGCGGGGTAAAGCCCTGTCAAGTTTAGGTGGCATGCGGTAAACCGGTTAAACACACGGCATACTCTTATTGCAAAGGAGCAAGTATTTGCTGTTTAGCCTTTATATGGTGCTAACGCGCCTGCTGGATATTTATTGCTGGATTTTGCTGCTATCGTGCATTTTTATTAATTTGTGCATGTTTGGTATTTTAGACAGCCGTAACCAGCTTGTTTGGAAAGTTGGTGTGTTTTTTAGCCGTGTGACCGAGCCTGTTTTGGGGCCTATACGGCGTATGCTCCCTAATTTGGGAGGGGTAGACTTTAGCCCCATGATTGTGCTGCTGGGCATACAGTACATTGTGCAGCCTTTGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18700-18552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOPK01000020.1 Acetobacter orientalis strain DsW_061 Contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18699 28 100.0 32 ............................ CCAGCCGGGTGCCCGCAATCTGCGTCTATCAC 18639 28 100.0 32 ............................ ACGCGGCCCCTCCCCTCGTGCTTCGCCCCATG 18579 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : TTAGAGCGGTTAGCGGCATCTGGCTGGCTTACCCGAGTGCAAGATTACGTGCAGTGCGGGCCTATTGGCCCCGTACCGCAGGGTTGCCAGCACCGTGTTGTTAAGCGGGTGCAAGCCAAAAGCAGCCCCGCCCGTTTACGCCGCCGGGCCATGCGCAGGCACGGGTTAGACACGCAGGCCGCCCTTGCTACTATACCCGACACCGCGGCAGAACGCCTGCGCCTGCCATTTGTTATTATAAGTAGCGCCAGCACTGGCCAGCACCGTTTTCCACTTTTTATTCGGCACGAGCCAGTGCAGCCTACGCCGCAACCCGGCCCCTTTAGCGCGTATGGTCTAAGCCTTGGCGGGAGTGTACCGTGGTTTTGACCCCTTTTTTGAGAAGGGATATAAAGATCTTTTAAAATCAAAGAGATAGTCTTCCCCTCTAAAAATAGGGGTAAAATGGCAAAACCAACATAAACCACTGCATTAAAATGGTTTATGTTGGTTAACGTCTA # Right flank : TACGACCACTAAGAACCTAGTCTAACCTTGTTCGCGTTTGACCTGTTGCCATAAGCTGTCCAGCTCTTCTACTGGGCGGTCTTGCATGGACAGGCCTTGTGTGGCCAGTTTGGCTTCTACGGCTTCAAAGCGGCGGGTAAATTTGTCGCAGGCTTGGCGTAGGCAGGCTTCGGGGTCTAGCTCTAGGCGGCGGGCTAGGCTGGCAATAGAAAAAAGCACATCGCCGAGTTCATCTTGCATGCGGGCTTTGTTGCCGCTGGCCATTTCAACGGCAAATTCTTCCATTTCCTCATGCACTTTTGCCACTATGCCTGCAACTTCTGGCCAGTCAAAACCTACGCGTGCGGCACGGCCTGCAATTTTGGAAGCCCGTAGCAAAGCAGGCAGCATAGGCGCAACGCCTGCCAACGCGCCAGAAGGTTTGCCACTTTTGGCAAATGTTTTACGCTCTTGCTCCTTTAATGCTTCCCACTGGCCGGGTAGGGCGGCGGTGTCGGGTG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //