Array 1 824-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQP01000027.1 Salmonella enterica subsp. enterica strain 102_16 NODE_27_length_63651_cov_25.62_ID_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 823 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 762 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 701 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 640 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 578 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 517 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 456 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 395 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 334 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 273 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 212 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 151 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 90 29 100.0 31 ............................. CTCTATTGCCGGGGTCGAGATGGCCGCCTGC 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18720-17104 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQP01000027.1 Salmonella enterica subsp. enterica strain 102_16 NODE_27_length_63651_cov_25.62_ID_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18719 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 18657 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 18596 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 18535 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 18474 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 18413 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 18352 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 18291 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 18230 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 18169 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 18108 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 18047 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 17986 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 17925 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 17864 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 17803 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 17742 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 17681 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 17619 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 17558 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 17497 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 17436 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 17375 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 17314 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 17253 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 17192 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 17131 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1223 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQP01000004.1 Salmonella enterica subsp. enterica strain 102_16 NODE_4_length_217661_cov_23.0654_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1 27 93.1 31 --........................... CTCTATTGCCGGGGGTCGAGATGGCCGCTGC 59 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 120 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 181 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 242 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 303 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 364 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 425 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 483 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 544 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 605 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 666 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 727 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 788 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 849 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 910 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 1011 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 1072 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 1133 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1194 29 93.1 0 A...........T................ | A [1220] ========== ====== ====== ====== ============================= ======================================================================== ================== 20 29 97.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //