Array 1 426877-420673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRZ010000001.1 Bifidobacterium sp. W8107 NODE_1_length_1725886_cov_308.120713, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 426876 29 96.6 32 ............................T GCAAGGCACATGCCAAGCGTGGTCAACAAAGA 426815 29 96.6 32 ............................T TTGAGGACGGTTCTGGCGTTCTTCCATGCGTC 426754 29 100.0 32 ............................. CCTGTGCGTGAGTTATTTACCACTATGTGCCC 426693 29 100.0 32 ............................. CACCTAATCCTTTCACCACCAACCATACCACA 426632 29 96.6 32 ............................G GAAAGGACGTGACAAATGGAAAGCATGTGGAT 426571 29 100.0 32 ............................. CGGATATGTCGGCGCTTGGCTGTCAGGCACCA 426510 29 96.6 32 ............................G GCTGCTCGGACGGCGTGCCTGTCGTGGCAGAA 426449 29 100.0 32 ............................. CAGGAGGCGGAAGACAGACACGCAATCACCCG 426388 29 96.6 32 ............................T CCGCCAGTCGTCTTCTCCCCCTGATACAATCC 426327 29 100.0 32 ............................. GCGAGCTACCACTATGATGCAGCAGCCATCAG 426266 29 100.0 32 ............................. CCTCTTTCAAAAAGAGTCATTTCTATGAAACG 426205 29 96.6 32 ............................G TACTCAACAAGCCAAAGCTCAAGGCCGAGGAG 426144 29 96.6 32 ............................A CGGTTCATGGTCTCTCCGAAGGCTTACGTGAG 426083 29 96.6 32 ............................G GAGGAGGCGCGCGACCAGGCTATGGAGACGGG 426022 29 96.6 32 ............................G CTCATAGGGATCCACTTTGATGCCGACGGCCG 425961 29 100.0 32 ............................. CATGTCAAAAGCCCGGGAGACCACGTTTTGAG 425900 29 100.0 32 ............................. TCAACTCATGCCTTTCTCGGAATCTATAAAAT 425839 29 96.6 32 ............................T CAGTTGAGCAAGAGGCTCAACCAGAAAAGCGA 425778 29 100.0 32 ............................. AGCCCAGACAGCAGCAAGCGCCACGCCAGCAG 425717 29 96.6 32 ............................T GTGCAGACGCTGATGAGGATTTTCCCCAATCT 425656 29 96.6 32 ............................G TTTCGGAAACACCATATCGGGTTTAGGCAAGA 425595 29 96.6 32 ............................G GGCGGCAGATTGTACCCGGTGGGCCAGTAACC 425534 29 96.6 32 ............................T TCGTCCGGCGTAATACGGATGGGCACTGGAAA 425473 29 100.0 32 ............................. CGGCTGATCCAAACCTTAGAGCGTGCGGCAGT 425412 29 100.0 32 ............................. TGCTAACCCTGCCCCGAGGAGCGCAGGTGACC 425351 29 96.6 32 ............................T AAGGGGACCGCTGCCGCTAACTACGACTATCT 425290 29 96.6 32 ............................T GACTACATGAGCACCACAGACTTTGCTTTACA 425229 29 96.6 32 ............C................ GGCTGGAACGGTAATATCGATCTGAGCGTGGT 425168 29 100.0 32 ............................. ACATCCAGAATGGTCAATATACGTCTTGTTGT 425107 29 100.0 32 ............................. TCGACCGTCGACGGCACCGCCTGAGACACCCA 425046 29 100.0 32 ............................. GCAGATCGCCAGATGGGTCAAGCAGACAACCG 424985 29 100.0 32 ............................. TCTCCCGTGGCACGGGGGATACGGTCGCGGTC 424924 29 96.6 32 ............................A TGTTCGCATTCATGCCGGAATTCTGCAATCTC 424863 29 96.6 32 ............................T GTCAAGATAATTCAAACCATAATCGTCATTCT 424802 29 100.0 32 ............................. CCTGCGCAAAGCCAAGCTCCCCCAGGTGCGCA 424741 29 96.6 32 ............................T CCCCGGTCGGCGGCTTGGTTTTTGCGCAGGCC 424680 29 100.0 32 ............................. GTGTCTGCGGCTCGGGTGGTGCTGTTCGATGG 424619 29 96.6 32 ..............T.............. AGACGCTCAAAGACTCACGCCACACCAACAGC 424558 29 100.0 32 ............................. CTCTACGCTCAGGTCACCCGGTATCCCGGTGG 424497 29 100.0 32 ............................. TTCTAACCCGTTGCCCCGGCCATCCGGTCGGG 424436 29 96.6 32 ............................T CATGGGCTTGCTCTGCTCACGCCGGCCCAGCA 424375 29 96.6 32 ............................G GACCAGGACGCTTACCCGGTCCTCGCGACCAT 424314 29 96.6 32 ............................T GTCACGACCACTGGTGCTGACGTGGTGGTAGC 424253 29 100.0 32 ............................. GTTTTGTCATCTCTCGCGGGTCGAGTACAGTG 424192 29 96.6 32 ............................T TTTGCGCCGTCGTTTCCGGCTTCGGTCTGCGC 424131 29 96.6 32 ............................T CGGCGGAAGGACGCGGATATCTCGGCTTGTTC 424070 29 96.6 32 ............................G CCCACCAGGCCGTCGGGCGTGGAAAACAGGCC 424009 29 82.8 33 ...........GGAT.............A CGGGCTCAACACCACCCACGCGCGGACCCGTGA 423947 29 96.6 32 ............................T CAGACGGGGCCATCCTTTGTTTATCAGTATGC 423886 29 96.6 32 ............................G GAAAAGTGGATGGACGATATCCTATTTGAATT 423825 29 96.6 32 ............................G TGTTCCCCGACAATCTAAGATTCCTGAGCAAT 423764 29 100.0 32 ............................. ATAGCCTTTAGGCGGGCCAGCCGTCTGGCCGA 423703 29 93.1 32 .................A..........T CTCATCATCGCTCTTGTTCTGCCACTGGGCAA 423642 29 100.0 32 ............................. GGATCAAACGAGATGGGCCTGAACACGTCCTC 423581 29 100.0 32 ............................. CTCTGATACATCCTGACGCGCGTTGTCTGCTG 423520 29 96.6 32 ............................T CCGTGGCGCAAAGACCGACAGACCGGCGATAC 423459 29 100.0 32 ............................. GGCATGGAAGCCCTCCTGCCTGGCCGAGGGGA 423398 29 96.6 32 ..............T.............. GTCTGTGAGAAACGATGGATGATCCGTCCCCA 423337 29 100.0 32 ............................. CCATCCCGCAGAATGCCTACGATCATTATCAA 423276 29 100.0 32 ............................. TGCACCATCTTCAACCCCATCCAGTCCTTGCA 423215 29 100.0 32 ............................. ACGCTCATGGCCTCCGTGTTGGCGGACAGGGG 423154 29 96.6 32 .....................C....... AGCCGCCGCCAGCAGGGCCAAAGCCTGCAGAT 423093 29 100.0 32 ............................. GGGATGTACTCAAGCATTTTAAGGGACGAATT 423032 29 96.6 32 ............................T GATCTTCAAGACGTTCTGAAGTCTGCAAGACG 422971 29 100.0 32 ............................. ATCATCTTGGTGCCGAGGCCGGTCTGATCCAT 422910 29 100.0 32 ............................. GGAACAACACGATGCACGCCTGGGCCAGCGCT 422849 29 96.6 32 ............................G TCACTCTTGAGCAGATCGGACCGCTGTGCATC 422788 29 96.6 32 ............................T GACCTCGCACCACTCGGTGTCACCAGTGTGCT 422727 29 100.0 32 ............................. CACTATGGAAAGGATGAAGATGATGAATAGTG 422666 29 96.6 32 ............................T CACCCTGACGAGGACAGCCTGCCGGAGCCTTA 422605 29 100.0 32 ............................. TACTGGGTCCATTTGACCAAGTGGTACCCAAC 422544 29 100.0 32 ............................. CCGGTGACGAGCTGGCATCGGTCATGAGAGTG 422483 29 100.0 32 ............................. AATTGGCACGGGCCACATGTAGACCCGATATT 422422 29 96.6 32 ............................T CAGTGGCCGACTGCCGGCTTTGCGGTCCATGG 422361 29 96.6 32 ............................G TCATCCGGGACTTATCCGACATCAGGGTGGCC 422300 29 96.6 32 ............................T GCCTCTCCCAATGGGCTTTTGCATATGCGTCG 422239 29 96.6 32 ............................T CTGCCGGATGGTGGGTCCAGAAAGTCGTTGGT 422178 29 100.0 32 ............................. CGTGTTGAGCTGCTTGTCGTCGCCCACCAGGA 422117 29 100.0 33 ............................. GGGCCTCTTGGCAGGTCCTCGCAGATCGGGCAG 422055 29 100.0 32 ............................. CGTTGCATGATTTCCTGCGTCGAGGAGCAATG 421994 29 96.6 33 ............................T CCCAGTCACCGTTCTTCAGGGCGATGGTGTACA 421932 29 96.6 32 ............................A TCGTCTCTGGGCATGTCTTCATACCACTGTTT 421871 29 93.1 32 ...T........................A CGCACGGTCCGCCTTGTTCGAAGCAGCGTCGG 421810 29 96.6 32 ............................G GCTCCAGGGCGATATCACCGGACTTGGTGCCA 421749 29 100.0 32 ............................. GAGTACCTGCACGCCCTGCAGGACCTGGGCAT 421688 29 100.0 32 ............................. GGGGTAGATCGCAAGTATGTAGACCGGCTGAA 421627 29 96.6 32 ............................T GGACGGCTGCACTTTTCAGCTTTGCCTGCTCG 421566 29 100.0 32 ............................. AACGAGACATTCGGCCCATACCCCATCACCAC 421505 29 96.6 32 ............................T GGTGCGGACTGGCCCGGCATCCCATTCGTCTC 421444 29 100.0 32 ............................. CCGACAATACGATCGTACGATGAACAGACTTT 421383 29 100.0 32 ............................. CGGCAGATGGAGAAGCTGAAACTCGGGTCTTC 421322 29 96.6 32 ..................A.......... TGGGCCAGCGCCCACTCCAGGGTCATGCCCGA 421261 29 96.6 32 ............................T TGTCGGGCGATGAAACCAGTCGGGTGAAAGTC 421200 29 93.1 32 .................T..........T ATGGGAGGCTTTCACCTCTTTTCTCAGCTCAT 421139 29 100.0 31 ............................. TGCTCCTGTCCGCCGCCGGCCATCTGGTCCG T [421113] 421078 29 100.0 32 ............................. CTGTACAATGCCGAAATCGAAGTCATCGTATG 421017 29 96.6 32 ............................T GACTCGAAGGCTGCCAAGGCCGGAGCCGACCA 420956 29 96.6 32 ............................T TTTGCAATCTGTGATGGTTTGCGGGTCTCAGG 420895 29 96.6 32 ............................T GAACCAGCTTTCGTTTGCCGCCACCCGATACA 420834 29 96.6 32 ............................G CTCTGGGTGGAGGGGTCGAACGGCATGGCCTG 420773 29 100.0 43 ............................. AAGCAGTGGACCGTGGCTTCTTAAGAGTATACAAATACTATCG 420701 29 86.2 0 ...T....T.........A.......T.. | ========== ====== ====== ====== ============================= =========================================== ================== 102 29 97.8 32 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : TGGCCACGTCACCGCTAGGGTCCGGGACCGGCTTTGGGAACGTATCACAGGGCAGATCCGAACGGGAAAGGCCATCATGGTCTATTCTGCCCGCAATGAGCAGCATCTGAGTTTCAAGGTGCATCGCTCAGATTGGAACCCAGTCGACTGTGAAGGATTGACTCTTATGGAGAGGCCTGCTGAAGGCGGCGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGAACTGGTTGGAGCAATGCAAGCAAGTACAGACGAGTGGCAAAGTTCCGGCGCTCGCGATCCAACTGAGTCCAAGCGGGACTCACTTTTCAGATGAGTTTTGCCGATGAGTGCCAGGTACTGATTACTGGGCCAGTGCATTGATAAGGATCTCTGTGTAGATGGTCTGAATCGCAGTGGCTGGGACGGGGAATGGAAGGGGCTCGAAATGCAAACTCATTAAAAATCAGAGATTTAGTCTATTATATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : ACAGGCTATCGGATGGATGCCCTGCAGGTTCACAAATATGAGAGGAGACGAATGACTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTACTCATGACCATATTCCTGATGACCGGATCAACAGTCACGCGTCATGCTATCCCATCACTGATGATATGGATGAAACCGAACGCCGGGTCTGGGATTTGCTGGATGACGAGGACAGGAAAATGATTCAGTCGGATCGTACATACTATGGGACAAACTATGGTGCTGGCTTCGGCGGCAATAGCAAGGTGAGTTTCTACGATGTGCTCGGCATCAGGCAGTTCGACTGATTCATCCCGGGCTTCCACATGTTGCTGCAATCATCAAAAGAATCACTATAGGAGCGCCGGGAAGAATCCATGACCGCTTCATAGTTCGAACATGAGTGTTTGATTCTCTTTAAGTCCCAGTAATCGCATTGGTGTGCCCTGATTGAAGGTTCTGTCTGCCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //