Array 1 3749-3927 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AFJO01000567.1 Leptospira interrogans serovar Grippotyphosa str. 2006006971 contig_567, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	====================================	====================================	==================
      3749	    36	 100.0	    36	....................................	CAAATTTCCCACGCGTGGGAAATTTGGCTCATTCGA	
      3821	    36	  97.2	    35	............................C.......	CAAATGTAAACTCAGATTTACATTTGATTGAAGCG 	
      3892	    36	  94.4	     0	......................A.....A.......	|                                   	
==========	======	======	======	====================================	====================================	==================
         3	    36	  97.2	    36	GTTTCTTTCTCTTATTCAAGAGGAAGTGGATTGAAA	                                    	       

# Left flank :   ATAGAGAACTTCCCCAATTGTTCTTAAAACTAAAAACTTTGTAAATGTTTACTGTTAAGTCGGATTGTTTGTTGAGTTTAGATTCAATTGTTTGTGAATTGATCTCTTTTAAAATCTCTAAAAGTTGTACAAACCAAAACACGTTTGTTAAAAATTTTAATTTGAGATGACTTCTAAAAAATTCTTTTGTTCCTTTTCCAAAAATTTCAGTTAGACGAACTTTGCCTCATGGATAGTCAGTCTTTCATCAATCTATCCTAAAACCCTGTTATAAGTTTGTCTTTGATAAGCCGATCTTTTAGAATGAATTGTTTTTTGCGAACCTGTTTCTCCCGGTAAATTACGGACCTTTCGCGCTCTTGCATGGATTCGTTGTTTGGCGATGTAACGGTTCCGCTTAACAATTGTGTAATATGGTAAAAATAGGTTCGCGATTATTATGTTTAGAAAGCTTAATAGAGCATTTTATAATACATTATTTTCAACCCTATTGAGCCGCC
# Right flank :  ATGTCGGTAAAGTGGCCAAAGGCGAAATGGAAGTTCGTTTTTTCCTCTTACTCAACATGAGTTCCTACAATTTCAGAATTTGTTCGTAAAATTGTGATTTGCAGTAGTTCCCACATCATTTTATAGAGGCTTTGTGGTAGTTCCCACAAATCAGAGCTTGTCCCAAAANNNCAAAGAATTTTACGCAATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGCTCCTAGAGATAAGTTCTCATTTGGCAATTTGCGAGCTTTCGAGTAGTTCTAATGTCGTTCCATTTTCGTAGTAGTTCCCACAAATTAAGTCACATTGTGAATATAGGTTTTAAATTCAATTTTTGTAAAGTTTTTCGAACTAAAAAGTTTTACTGATTTTTATAAAATTAAATACCGTGAATTTTTATCCTAAAACCCTGTTATACGGTTTTGAATGGATCTTATTCTAGAAAAATCATACATCTAAATCACGTTTACTTTCATTTAAATACAATGT

# Questionable array : NO	 Score: 5.53
# 	Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCTTTCTCTTATTCAAGAGGAAGTGGATTGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-6.20,-3.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : NA
//


Array 1 296-47 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AFJO01000208.1 Leptospira interrogans serovar Grippotyphosa str. 2006006971 contig_208, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	====================================	===================================	==================
       295	    36	 100.0	    35	....................................	CATAAACAACTAGAATTTCTCATATCGGCAATTAG	
       224	    36	 100.0	    34	....................................	ACGTGACGAACATCGCCCGAGGGCGTATATTTTC 	
       154	    36	 100.0	    35	....................................	TAGATAATCAGAAGCAGAACCGGGCATTTTTTAAA	
        83	    36	  75.0	     0	......................CG.T..T.G.AAGT	|                                  	T [58]
==========	======	======	======	====================================	===================================	==================
         4	    36	  93.8	    35	GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG	                                   	       

# Left flank :   CAAAGTTATATTCAGAAGATCACAAAATCGGAAAGCACGGATATACAATTT
# Right flank :  TTTGACTTAAGAGACACAGAAACCCTTTCTTTCAAAGTGGGAGTTCC

# Questionable array : NO	 Score: 2.55
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.80,-4.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.68   Confidence: LOW] 

# Array family : NA
//