Array 1 87260-92328 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOT01000001.1 Bifidobacterium pseudocatenulatum strain TM07-3AT TM07-3AT.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 87260 33 100.0 35 ................................. AAATATGACTCTCAAGGAAAAGAATGAACTGCTGA 87328 33 100.0 35 ................................. TCGACGCGCTCGGCGCTGACACCACCGATAATGCC 87396 33 100.0 33 ................................. TACGAGCACGGCGAGGAAGAGCTTCCGAAGCTT 87462 33 100.0 33 ................................. GGCAAACCCAGTGCCGGCGGCATCGTCGACCTG 87528 33 100.0 34 ................................. TTCTCGTTCGTCGGGGTAACGCCGGATGACATGT 87595 33 100.0 34 ................................. TTCGCGGCGAGACGATCGTAGAGGCTGTCATCCA 87662 33 100.0 33 ................................. TAGGAATCTGCCGAATTTTGACTTGGCAACTTT 87728 33 100.0 34 ................................. ACACCCTTACGTTTATCGGGAAAGAAGAGGGCTA 87795 33 100.0 34 ................................. GTCGAAAATCGGATAATAAGCGGAACTTAAATGT 87862 33 100.0 35 ................................. AATACCGAGTCTACCGAACTCGGCACTGTCCAGCA 87930 33 100.0 33 ................................. AACAAGGACTGCTCGCTACCGCTCGTGACTTTC 87996 33 100.0 35 ................................. GCCCGCAGCATGTCGATGCCATTATCCGCACACCA 88064 33 100.0 33 ................................. ACCGGGAACCCGCTGATGCGTACAAGGTGGCAG 88130 33 100.0 34 ................................. TGTGGCTAGATAATCGGCAAGGTTTATCTGATAC 88197 33 100.0 33 ................................. CCGAAGTCGGAGCTCCGCCATCGCGTCTATGAT 88263 33 100.0 35 ................................. GGCGAACAGTTCGAGCGCATCAATAAAACGCTGGA 88331 33 100.0 34 ................................. AAGTGTTTTTCGAGCGTATCGTCAATGGTGCGCA 88398 33 100.0 34 ................................. ATACGATGTCGTTGAAAGCGTCATTGGACGGCGT 88465 33 100.0 36 ................................. GTTGTGAAAAATGGTTTTGTTGCCGAGCACGGCAAA 88534 33 100.0 34 ................................. CCCAACGTCACTCCCTTTTTGGCGGATAAGATCA 88601 33 100.0 33 ................................. GCATCTATCTTAAGTGCGCTACAAAAATGATTG 88667 33 100.0 36 ................................. ACGACCGCGCCCATGGTTGAACAGCTGCTAGGGGAG 88736 33 100.0 36 ................................. CTCAGACTCGTATTGACGATTTCCGCAAATACGCCA 88805 33 100.0 35 ................................. CGATCAGGTCAGCCGGCGTAATAGGGCGTGGGATT 88873 33 100.0 32 ................................. GCTCCAAGTGCATCGCCCAGGCCATCGACCAG 88938 33 100.0 35 ................................. AACTGGTCACGCATGTGACCATCAAATATTAAGGA 89006 33 100.0 33 ................................. AATCCGTCATCGCCCGCGTACCGGTCGATGAGA 89072 33 100.0 36 ................................. TATCGCTTCCTGGGTGAGTTTTTTTGGTGTGCGCTG 89141 33 100.0 34 ................................. TGCATGACTAGCGTCCCGTTTGCGCGGGAAGGGT 89208 33 100.0 33 ................................. TTACCGCCTTGCAGCGTGACTCGCCGTCCGCCA 89274 33 100.0 32 ................................. TATCTCGAAATGGGCGGATTGCGCGCCATGGG 89339 33 100.0 33 ................................. AGCGCATTGGCGCTGTATGAAAGAATGAAAATA 89405 33 100.0 36 ................................. TCACGCTGGTCGGAAATGGAATCCTGCGACGGCGAG 89474 33 100.0 34 ................................. GTCAAGGGTCCGGCCGACAAGCCTTTGATCTGCA 89541 33 100.0 33 ................................. TCCAGGGACACGGCAGCATACTAGCCCTCGGGT 89607 33 100.0 34 ................................. GCCAAGCAGGTCATGGACGAATGCGTCAGGCTCC 89674 33 100.0 36 ................................. ATGTCGAGCACGTCGTTTTTGTCGGCCGACTTCATG 89743 33 100.0 34 ................................. GTGGACCAGTCAGCCGGCCGCACCCTGGTGTCCG 89810 33 100.0 36 ................................. GGGGCTTATCCCGTTGGATAGGTTGTATGAGATTGA 89879 33 100.0 35 ................................. GTTGCAGCAGACGGCTGCGGACGCTGCGCAGGCGG 89947 33 100.0 33 ................................. ATGAATGAGATGGTATTCAACGTGATCGATGCA 90013 33 100.0 33 ................................. AGAATGCGAAGGTGACGCTGGGTGTTGCCGATG 90079 33 100.0 32 ................................. TAAGCGATAGCCACAGAAAACGGAGGTAGCTA 90144 33 100.0 35 ................................. ACCGCCTTGACCGCGCCCTACGCGGCGGTTCCGGA 90212 33 100.0 34 ................................. TCGCGTAGAATGACAGGAAATCAAGAGGAGGAAA 90279 33 100.0 32 ................................. TATTGCCCCTTGACTTGGGGCGGGAAGGAGAG 90344 33 100.0 36 ................................. CAAGAACCGCCATTACTGGCCGCGATGGTACTGAGC 90413 33 100.0 33 ................................. TGCTTCGCGCCGAGATCATCCGGATCCATCGCG 90479 33 100.0 33 ................................. TTTCAATTCTTCTCTCGATTCGGATTTACGCTA 90545 33 100.0 35 ................................. GAGACCGACAAGGACCATGCGCATCTCCTCGTGGC 90613 33 100.0 36 ................................. ACTGTCGAGTGTCCAGTATTCGTCCAACGCCTTCGA 90682 33 100.0 33 ................................. CGATGTGTGCGAAAGTCGCTCTACGAAGCCATT 90748 33 100.0 33 ................................. GAAACCTGCCATGTGTACTTAGCTGACCCACTT 90814 33 100.0 36 ................................. CTTGTGAACAACATTGTTACTCCTTTGCGCCTTCGC 90883 33 100.0 34 ................................. AATGCGTAATGGATATATCGAGGAAGGTCTGGCG 90950 33 100.0 34 ................................. CGTATCGCATCATTCCGATTCCCGAAGACATGTT 91017 33 100.0 34 ................................. TCGACCTGGACAGTGCCGTAACTGTTGCCCTTAT 91084 33 100.0 34 ................................. AGAATGGAGCCGTCGTTCAGTTCGACCTCATGCG 91151 33 100.0 35 ................................. TGGAACGGGACGCGCTCATCGTCGAAATCGAACAC 91219 33 100.0 36 ................................. TTAAACCGATGCGTGATAACAAAGGATCAGATGGAT 91288 33 100.0 35 ................................. TGATTGTCCCGCCATGCCTGACATGCGCGGCGCGT 91356 33 100.0 35 ................................. CACGACAGCTCTGGCAGCATGGTGGACAATTGGTA 91424 33 100.0 34 ................................. ACGATCAAGATCACCGACGACGGCCACGTGACCA 91491 33 100.0 36 ................................. TGCGCTGCAGTCAGACTGCGGAACTGCTTGAGTCGT 91560 33 100.0 33 ................................. TTGATCAGGCGCACGTTGCCGGCGGTATTGCCG 91626 33 100.0 33 ................................. GGCGGATTAATAGTACCGTCCAAATATTCCACG 91692 33 100.0 36 ................................. TGATTGTCCAGCCATGCCTGGCATGCCCGATGCGTG 91761 33 100.0 34 ................................. TGCAAATGACGAACGTGCTGAGTGACGAAGCCTT 91828 33 100.0 33 ................................. CTTGCGGTGTTGTTCCACGTCAGTCCGGCGAAG 91894 33 100.0 34 ................................. AGGAAATGATTGAGTGCAGTGCCGAGCGCATTGG 91961 33 100.0 34 ................................. CTTGACGATCGTGTCGATGATGACGTCCACGAGA 92028 33 100.0 36 ................................. CACGGGGTATCGGCCTTATACTGTATGACGCGTTTT 92097 33 100.0 34 ................................. CGCGCGTTGGGCCAAACCCGACGAGATGGCACCG 92164 33 100.0 34 ................................. TGGCTGTACGACACGATCGACGTGACCGCGCAGA 92231 33 100.0 32 ................................. TTGAGCATGCGGAGCATGACGTTGGCGGTCGT 92296 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 76 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 483042-483320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOT01000002.1 Bifidobacterium pseudocatenulatum strain TM07-3AT TM07-3AT.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 483042 24 100.0 27 ........................ ACGAACCGTCCAAATACCGAGCCCAAG 483093 24 100.0 27 ........................ ACCAGACGTCACAAAACATACGTTACG 483144 24 87.5 27 ..........GGG........... AACACAAGCCCATATACGTATCACGGT 483195 24 87.5 27 ..A.......TG............ ACAAACCATCCGAATCCGACGTGCAGA 483246 24 79.2 27 ..A.......GGG....A...... AGTAGACAACGCCATACGCACCACAGT 483297 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 6 24 92.4 27 TGTCCGATTCACCAGAATCGGACA # Left flank : GGAAAGCTGATCCTTCGCAAGAATGTTGAACAGAGCCTTGCCGAACGGATTGCCGGATTTCGACAGGCGCGCCTTAAGACGCTGCATGCGCGTGCCGGCGGATTCGGGGGTTTCATGAACCGGTTCGGGCTTGGCTTCGGTGGCTGGTGCAGGAGCTGCCGTTTCGGAAGAGGAAGCTTGAGCTGAGGACTTCTGCTGACTTTCAGCCGGAGCTTTTTCAGCTGCATCAACATTGGAATCAACGGACGGCTTCACCGTGGAAGAATCAGCCGCAGCCGACTTTGCTTCCGCGGCAAGACGGGCGTCAGCCTTGGCTTTCGCATCCTCCGTGGACTTATCGACGGCGTTCTTGCGGGTCTTACCGAGCCACCAACCGCCAATCACCAGAATTGCCGCGATAACGACAACGGCGACAATCGCAATAATCACATTCGTATCCATGACTCCAGCCTAAAAAGCGCAACGGACACACCGGCTCCGCCCCGCGGACGCACCACGAA # Right flank : AGACTATCCACGGGGCATGAAAAACTGGACGGCATGGCCAATACATCCAGAATGACGTCGTATCAGCGGCGCGAGCAGCTCATCGAAATCGGTCGTTCGCTGTTCGCGTCGAAGGGGTTCGAAGCAGTGAGCGTGGAGGAGATCGCCGCCACCGCGAAAGTGTCGAAACCCATTGTGTACGAGCATTTCGGAGGCAAAGAGGGCCTGTACGCTGTGGTGGTGGACCGCGAAATGCGCGCCCTTACCGACACGCTCGTCAACGCGCTCTCCGACCCACAAGCGCACCCCCGTCAAATCGTGGAACGCACGGCGCTGGCACTGCTCACCTATGTTGAGGAGAATGCTGAAGGATTCCGAGTGCTCACCCGCGATTCGCCGAAAACCGATCCGGCCAGCTCGTTCAATTCGCTTTTGGGAGACATCGCCCTGCGCGTGGAAGACATTCTCGCCGAAGCGTTCAAACGCCAGCACCTGCCGGCCAAGGGCGTGCCATACTACGC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCACCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //