Array 1 351-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFB01000045.1 Capnocytophaga ochracea strain 490_CAPN 852_498_16135_519_,335+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 350 46 100.0 30 .............................................. TCTTGTTTGGTACACCACAAATCTATGCAC 274 46 100.0 30 .............................................. TAAGCAAGGCAATGTTTGATTGCTTAATAA 198 46 100.0 30 .............................................. GTGTATCTTCTACACCTGTAAAGAAGTCGC 122 46 100.0 30 .............................................. AGCAGAAAGTTGCAATGACTGCCCCAACCA 46 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 5 46 100.0 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : ACCTTAGGAAGTTAATCATCTAATAGAATATAGAAAGAGGTTGCTCAGAAGTCTGGGCAACCTTTTTTATGCTTTGTTACTTATAAAATATTTTTTTTTGTATCTTTGTGCTTTATTGTTGAACTAATTTGATAAATTAAACATTTA # Right flank : C # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 310-112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFB01000039.1 Capnocytophaga ochracea strain 490_CAPN 841_1971_53377_432_,147+,334+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 309 46 97.8 30 A............................................. GTAGTACTATTACTCCTGCCACAAGTGGAG 233 46 100.0 30 .............................................. TTATGTTGAAATTCCCACAACTGACCTTGC 157 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 3 46 99.3 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : CAAGATGGTTTAAAAGTAATCAGAATTAACGCCTCTTCATTGTACATTCTGTATACTACAGATGGAAAGACCTGGACTGCTAACGCAAAAAGGTAATTCTAAAAAAGAAGTACTAAAAAACCCCGAAAATATATATTTTCGGGGTTTTTTCATTTTTAATATGTGCTCTTCCTTATTACTTCTTTTTAAATATCAAATTTATCAAGAATAAAATAACAATAGCTCCAATAGCTCCTGTCAAGATAGCACCAATCCATCCTCCTCCAAGTGAGACGTGAAACACATCTCCTAAAAGCCAATATCCCACGATACTTCCAAGAATACCAATAATGATATTGCCGATAAGACCTAATCCACTACCTTTGTAGATAGTTCCTCCTAACCATCCAGCGATGGCTCCAATAATAAGTGTTGCGATAATACCCATAATTTTTAATATTAAATTAGGGTACAAAGGTAAGAATTATTATTTAAAAAACAAATAAAAATCATAACGTTGT # Right flank : CAATTTTCAGATGAACAAATTGATATACTAAAAAGGTTGTTATTTAGAATTTGTTAAAAACAATACAAAGTCTACAATTAAAAGTTAAAACAATCTTAAACTTTGTTAACTT # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 18-2266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFB01000048.1 Capnocytophaga ochracea strain 490_CAPN 855_12012_377429_564_,...,670_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 18 46 100.0 30 .............................................. CATTAGCTAAACCTAATGAATATAAGTTTA 94 46 100.0 30 .............................................. GCTTATTAAAAAAGGATGCAAAAGGAAACC 170 46 100.0 30 .............................................. CTATTTTCACCTCCTCTGTTGCTCTTACCA 246 46 100.0 30 .............................................. AGGGGCTTTTTTTGTTACTATTGTCTACCT 322 46 100.0 30 .............................................. CTTAAATAATAACTGATAACTGATAAAAGG 398 46 100.0 30 .............................................. TTGTCGTGAGGCGCATTGGCATAGATGATG 474 46 100.0 30 .............................................. ATCCGATAGCAAGGTAGCACGTGCGATAGG 550 46 97.8 30 ..........................................T... TCTTCGTCAAGTTCGGTATGTGAGCGTGTC 626 46 100.0 30 .............................................. AGCAGAAAGTTGCAATGACTGCCCCAACCA 702 46 100.0 30 .............................................. TAAGAAGCCTCTACATCGGGATAAGCTTTA 778 46 100.0 30 .............................................. GGTATGCTAATAATTCCTCGTGCAATATTC 854 46 100.0 30 .............................................. ATACACAAGTAGACAAGTATGGTTCAGACA 930 46 100.0 29 .............................................. AAAACCGCTTGCCGATGGTGAGTATGTTT 1005 46 100.0 30 .............................................. CATTACTATCAACCATAAACTTAAACGAAT 1081 46 100.0 30 .............................................. CCGAAGGTATGAGTAAAGCTATATTAGGTA 1157 46 100.0 30 .............................................. TAGGGCGATGGAAGAATAGAGAATACAATT 1233 46 100.0 30 .............................................. AAGCTATAAAGGCACGAGTCCAGGACGGAT 1309 46 100.0 30 .............................................. TTGAGTCCTGCAAATTCGTACTTTTTTCCC 1385 46 100.0 30 .............................................. TTTTCTCCGATATTCACAACGTCGAAACTC 1461 46 100.0 30 .............................................. GGTGCAAAGGTAAAGTACTCTTTATTTAAT 1537 46 100.0 30 .............................................. ACCGTATCTATACATCAGCAGGAAAAGAGG 1613 46 100.0 30 .............................................. ATACATCTGAAATATGTGGGGCAGAAATTA 1689 46 100.0 30 .............................................. TTAGAGAAATCAGTTATCACTTTTAATTCT 1765 46 100.0 30 .............................................. ACTGATACTTCTTTTAATTCGCCACTATCC 1841 46 100.0 30 .............................................. AGAAGTTGGGGTATAATGTTTTTTATAACT 1917 46 100.0 30 .............................................. AAACGATTTGATTAATGAAGAACAGGAATA 1993 46 100.0 30 .............................................. TTTAATGCGCAATTCAGCACGATAACCTGT 2069 46 100.0 30 .............................................. GCACCCTTGCGACTCTTTGGCATACGGGCA 2145 46 100.0 30 .............................................. AACACGACATTAAACTACAACAAGCAGGAG 2221 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 30 46 99.9 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : AATGACTGCCCCAACCAG # Right flank : CCTCAATCTTTTAAAGATTTTAGTATCAATCGGTTTTGCTTAAAAACAGTACTGAAAAAACCTCCTCTTTTATCTTTGTTTATAAGGTAAAAGAGGAGGTTTTACTTTTCTATTCTTCTTAAAAAAGCTCTAATTGCACATAAGTTTCGGGAGCTGCTGTTTCTCTCTGACAGTAAAAGAACTCCATATCGCCAAACTGCTTATCGGTTAGGCACATAATAGCTATATTGCCATACTGAGGTAAGTTTTGTTTTACACGATTGATATGCACTTGGGCATTCTCTCTACTAGGGCAATGCCTTACGTACATCGAAAACTGAAAGAGCGTAAAACCGTCCTTTATGAGTTTATCACGAAAGTTCTGTGCTTCTTTACGCATCTTCTTCGTTTCTGTTGGCAAATCGTATAATACTAATACCCACATAATTCTATAAGCATTGTATCGGTCGGCTATTATCATAATTCAGGATAAGCTATCAGTCGCTTTTCACCCGTATAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //