Array 1 542-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVRG01000007.1 Rothia mucilaginosa strain 175_RMUC 252_207965_12560405_25+,...,237_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 541 36 100.0 36 .................................... CTGCGTTCACTGGACCAATAGCTCCGGTTGCCAGAA 469 36 100.0 36 .................................... CTTGTTCCGCCGGATGAATTCATCAAAAAAACCGAG 397 36 100.0 37 .................................... CGGCCGGTGAATATGCGACTAAATTCAAGATTGATAA 324 36 100.0 37 .................................... TTCTCAAGCACACGAAAACTCAAGCCGTGAACTCATG 251 36 100.0 36 .................................... CCTCAACTGCGTTCGGGTTCGTGCCCAAGGTGAGCC 179 36 100.0 34 .................................... AATGTACCGCACCTATTGGGGGCGGTACATTTTT 109 36 100.0 37 .................................... AACGGTAGGGGAGGTACCCCTCCCCGGGGAGATGAAG 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : TTTTGACAAGGTGTTTACTGAGGAGATGCTGGCTGGTGGTTATCAGAAGAAGTATTTCCGTGCGGTGTCTCGTTTGACTGCGTTGGCTCGTGAGGGCATGCTGGGTGAGGAGGCGGAGCGCTAGTTCCGCTGTTCGCCGGGGCCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCCGTGAGACTCGAAGCTCGCCCGGTTTGCATGGTTAGCTTGGTTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAGGACCCTCGCCGGGTCGCTTAGGAAGCACCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGTGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCGCGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCT # Right flank : G # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 259394-255989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVRG01000015.1 Rothia mucilaginosa strain 175_RMUC 260_259393_14915810_129+,...,25+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================= ================== 259393 35 100.0 38 ................................... GAACGGTAGGGGAGGTACCCCTCCCCGGGGAGATGAAG 259320 35 100.0 37 ................................... GCAGAAGCAGTACCGAGAAGACCGCCTAGCACGCAAG 259248 35 100.0 35 ................................... GATTTGGGTGAGGTGGATGTGAACTCCGGGGTTGT 259178 35 100.0 37 ................................... GACAAGGCCAACCCCGAGGACACCGCAGAAGACCCCC 259106 35 100.0 37 ................................... GCGCGAATAAGCTAGAGGCCGCACACATCTCAAATGT 259034 35 100.0 37 ................................... GGAATTTGAGCCGAAAGGGTCGCGCACTGAAGTTTGC 258962 35 100.0 39 ................................... GCTTCCAAGAGCTACAAGTCCAATGTTTCCCCTACCGAA 258888 35 100.0 39 ................................... GGGGTGTAACAGAATCTAGTGGAGGTCTTGCTATCGGAG 258814 35 100.0 37 ................................... GGCACTCCACGGCGTGTTACCCGTCCGTGCGCACCTT 258742 35 100.0 36 ................................... GCTCCTGATGATGCAGTCGGGGATTCAGCCCCAGCA 258671 35 100.0 36 ................................... GAAGACTCATTTCGTGACTCGCCGTAATGCGGCGGG 258600 35 100.0 38 ................................... GAGGCTGCTGATAATTGGCGCGAGTTTTTCCGTCAGCG 258527 35 100.0 38 ................................... GTGTGAGCGCTAAGCCTGCTACTCGTTTGTATGATGGC 258454 35 100.0 39 ................................... GACCATCAATAATACGCGCAACCGCCACACCCGGCACGA 258380 35 100.0 35 ................................... GCTGATTTGCTGTTCGGTGCCGCCGGTCGGCTGCA 258310 35 100.0 36 ................................... GCGTTGTTATTCACAGCGTGGAATTTCTGTTCCGGG 258239 35 100.0 34 ................................... GCAAAATTCGCGGGTGTTCGCCGTGCGGTTGTAA 258170 35 100.0 36 ................................... GTCCCACGGGTGGAGAGGCAACCCACCCGGTGCGGG 258099 35 100.0 38 ................................... GTTTCGCGACAAAAACTAAGGCGCTTTCTTATCGCGAA 258026 35 100.0 38 ................................... GAAAAATGGCCCCGCGACGTTGGAGCGTCCGGGACCGT 257953 35 100.0 37 ................................... GCCCGTTAGATGGGTGCTCTTTTCGCGACTGAACGCA 257881 35 100.0 37 ................................... GTCATCTGACGCGCGAAGGAAAGGCTGCGGGGCTGTG 257809 35 100.0 36 ................................... GCCAGAAGGCTCCTGTGAACCCGGTCCACTACCTTC 257738 35 100.0 38 ................................... GCGCGCGCTACCCACCACACGGGGGTGCTGCGCTTCTT 257665 35 100.0 38 ................................... GTCTGAGCCGTCAAGCCCAGCTCACGGCGCAAACGGCG 257592 35 100.0 35 ................................... GTTGTTCGGTGACGGTGTTGCCGACCAGTTCACGG 257522 35 97.1 40 ...............T................... GACGTCAAGACCGACCCCATGCCTATCAGTGCGAACGCGG 257447 35 100.0 38 ................................... GTCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAG 257374 35 91.4 39 ...............T...A..G............ CTGCGGCAAACCTCCATGCTCACCACCGACACCACCCAC 257300 35 94.3 37 ...............T......G............ CAACGGGGAAACGATTTCAGCTTGGATGCCTGTCCGC GG [257281] 257226 34 91.4 36 ...............T...-..G............ CGGTGTTCGGCGCGCACGGCGTCCACGCTCTCATGC C [257220] 257155 35 91.4 38 ...............T...A..G............ CAAACTCCACGGTTCGTCAAACCAGTACCGCGTCCAGG 257082 35 85.7 89 ........A.........C..........A.A..A TAGAACAATATCCCCTCAAGGTGACTGCGGGACCTCTTGTGCTACACCTTGAGGTGTAGACTTTCTTCATTGAGGTCCGGTGCAGGAGG 256958 35 88.6 37 G..C...........T......G............ CGGCAGCAGGTGATGCCGCGGCTACTGATCCTCACCA 256886 35 88.6 36 .............C.G...A..G............ CTGACCAGCCCAGCAGACAGGAACTCCTGGACACCC 256815 35 91.4 40 ...............G...A..G............ CGCGACGGCGAGGTTCGTCGTCAGTGTCGATTTTCCGGTG 256740 35 88.6 35 .............C.G...A..G............ CGACGCTACAATTAGAGATGTGAAAGCTCACCCTG 256670 35 91.4 36 ...............T...A..G............ CTAGAAGCGACGGTGCCATCAGGATTGATCGCACCG 256599 35 94.3 37 ..................T...G............ CGACCGCCAGCAGGCACCAGCACCGCGAAATCACGAA 256527 35 100.0 38 ................................... GCCCGTCACCGAAGCCGCCGCAAGCTCGCGCTATGAGG 256454 35 100.0 37 ................................... GGTCATAACGGCACCGGCGGCAAGACAGGTGGGCAAG 256382 35 100.0 36 ................................... GGCAAGGGTTTAACTCGCCAAAATGCAGAATGAGGC 256311 35 97.1 37 ......T............................ GGGTCACATTGCTGTCGTGTTGTCGGTGAATGATGAT 256239 35 97.1 37 ......T............................ CACACACCCGCTCGCTTTCACCGCCGACCACCTCGAT 256167 35 88.6 38 .............C.G...A..G............ CCCGATGAGTCAGCCCACCGTCTCACGATGGGTAGAGC 256094 35 91.4 36 ...............T...A..G............ CCCAGGGGTAAATCAAAAAACCACACACCGGCGGGA 256023 35 88.6 0 ...............T...A..G........A... | ========== ====== ====== ====== =================================== ========================================================================================= ================== 47 35 97.0 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGG # Left flank : | # Right flank : CATTGAGGCGGGCTCATCCCTGCTTGCGCAGGAAACACCTCAACCTTCCCTACGGTTTCGTAGGGACTTTCCCTAACCTATTCCTGCTCCGTTCCTGGACCCGCCACAGTCCAGGAACGGAGCTTTTCCTTTTTGCCGCGCAGGAAGCAACCAGGCTAAAACACCGACCGCAAACCCCGCTCACTAGCTGCCACCCGCCTCCTCCACACATCCAAGCAGAAAACTCAACACGCCGGAATAGCGTCATAAACTCGCTGATAAGCCAAAACACCCCGCCGCAGTGCTAACCTCAAAACCAAGCAGCCAAAGCTGACTGCCTACCATACTCGCTCACACCAAGGAGACACCGATGTCTACCCCTTACAGTGCAGGCGACGAACTTCCTATCTCACTCGTCATGCACACCGTGTACTGTCCCCGCCGCGCATGGATTGAATCCAATGGCGAAAAGACCGACACCTCACAAATGCAAGAAGGGCAGTCCGCCCACAAACGAGTCG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [39-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //