Array 1 935-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXYC01000002.1 Escherichia coli isolate chicken fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 934 29 100.0 32 ............................. CGTCGCCACACGCTGGCGCTTCAGGGGTGCTC 873 29 100.0 32 ............................. GAACGATTTATAAAAACACCTTTCGCCTTTTT 812 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 751 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 690 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 629 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 568 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 507 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 446 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 385 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 324 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 263 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 202 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 141 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GCATCCGTTCAAATTCCATCAGATAGCAAACCAGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159216-157845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXYC01000001.1 Escherichia coli isolate chicken fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159215 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 159154 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 159093 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 159032 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 158971 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 158910 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 158849 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 158788 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 158727 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 158666 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 158605 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 158544 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 158483 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 158422 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 158361 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 158300 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 158239 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 158178 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 158117 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 158056 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 157995 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 157934 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 157873 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGTCGCACTCAATTTCGTCAGTGAACGGGAACC # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43759-45131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXYC01000030.1 Escherichia coli isolate chicken fecal, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43759 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 43820 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 43881 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 43942 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 44003 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 44065 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 44126 29 96.6 32 .......................G..... GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 44187 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 44248 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 44309 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 44370 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 44431 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 44492 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 44553 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 44614 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 44675 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 44737 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 44798 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 44859 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 44920 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 44981 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 45042 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 45103 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //