Array 1 21-716 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZC01000071.1 Lactobacillus acetotolerans DSM 20749 = JCM 3825 strain DSM 20749 Scaffold71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21 36 97.2 30 ..................................A. ATTCAAAATGGCCAAGCTAAACATTATCCC 87 36 100.0 30 .................................... TCAGTGATGTTAATGAATAGCCTAGAAAAA 153 36 100.0 30 .................................... GTTTAGCAGAAGCTAAGCATCTCAATATCA 219 36 100.0 30 .................................... ATTTATAATGAGATGTCGGTACAGATTCAA 285 36 100.0 30 .................................... TGCGACTACAACACAATCTCAACCTACACA 351 36 100.0 30 .................................... AGGGCCCGAGACAGGAAGCACTTGTTTCTG 417 36 100.0 30 .................................... CAAGCTTTAGGAAAGCCTTTTCAGTTTTAC 483 36 100.0 30 .................................... CCAGTTGCCGGGCACCACGTTCTTCGAACT 549 36 97.2 30 ..................................A. AATTATCGGTTCTACGTTTATGCTCTTCAG 615 36 97.2 30 ..................................A. TCCTGGTGATAAAGATGATCCATTTGCAGG 681 36 83.3 0 ..................T....G.GCT......A. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.7 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Left flank : ATTAATCAGGATTTGAATCTG # Right flank : CGTACGTAGCAAAACCAATATGGCGGACTTAATTTTAGATATCTGTTAGATCAAAAAAGGCGATTTTAATTAATCGCCTTTTTCTTACGCTTTCTTTTAAAATTCTTAACTTTTCTTTTAAAATTCGTTTTACTGACTGGTCAATTTGCTTTTCTGATATCTCTTTATTTTTAACTGCTTGTTAATTGCTGGAATTCTGTTTTTGTAATTTCCTCCTAAAAGTAAATAATTACCTGCTTTTAGAGCTAAAATATCAGCGTTTGTGTGGTGTAATTTAGTATATTGTGTAATTGCACCCATTTGAAGATCATCAGAAATAATTAAGCCATTGTAATCCAATCTTCTACGTAAAAGTTTATGAACTGTAGATGAAAGGGATGCAGGTAGCTTAGGATCCATGTTTTAATAATAATGTGTGGGACCATGATACCATCTGCGCCAGCTTCAATACCAGCTTTAAAGGGCAACAGATCTTCGCATTCATAATCTTTAGGAGATTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Alternate repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 184-1798 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZC01000035.1 Lactobacillus acetotolerans DSM 20749 = JCM 3825 strain DSM 20749 Scaffold35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184 29 96.6 32 ............................C ATAAGATCTAGTTACTGATTCACTGGACTTTA 245 29 100.0 32 ............................. ATTTGACCGGTGATTACTGTGTCAAATCCGGC 306 29 100.0 32 ............................. AGCCAACCCACTTTTCCATAGCAAAAACGGCA 367 29 100.0 32 ............................. CATATGATTTACCATCACTATCAAGTGCATTT 428 29 100.0 32 ............................. AATAGCTTTAGCAGTTGTGGAAGATGCAGCAG 489 29 100.0 32 ............................. GAGTATTTGTGTTGATATATTTTTGATAATGC 550 29 100.0 32 ............................. AAGCGCGGTGGTTTAACTAAGACTGGTTCAGC 611 29 100.0 32 ............................. GTTCAGTTCACTGACTTCAGGAGAATACATCA 672 29 100.0 32 ............................. ACCAACGCTGTTGTAATTGCTTTGCCAACTAG 733 29 100.0 32 ............................. AAAAAGCTTGGGTTTTAATCAAGCAAAAGTAG 794 29 100.0 32 ............................. AAGTGTCGTGGTAAGTTAACCAGAAAACCGTC 855 29 100.0 32 ............................. ATCTTCTTTTGCTTTCTCCCACGGGATCCATG 916 29 100.0 32 ............................. TATGAATCAGAATTAAAGCAATTCCTTGAAGA 977 29 96.6 32 ............................C AGTCGGCAATGTCTTCATCCTGTCCGCCTAAG 1038 29 100.0 32 ............................. AAATAAAAACCAAGATGTTGCAGTTATCCAAA 1099 29 100.0 33 ............................. ACCTGTTTTTTTCTGCAACATCTGAAAGAGATA 1161 29 100.0 32 ............................. TAGATGAAAAGTATTTTGAAATAGCTAAGCAA 1222 29 100.0 32 ............................. ATGCAAAAAAACACAATCAGTTAAGCAAGGTG 1283 29 100.0 32 ............................. TTCTTTTGCGCTACTAGGCATTTACGAATGTT 1344 29 100.0 32 ............................. ACAAAATGACACTTACTCGTTTTGGTAAAGAA 1405 29 100.0 32 ............................. ACCACTTAGTTTTGTCAAAGCCTGCTCGATTG 1466 29 96.6 32 ............................C TAGAACCAGATAGTGAAATGATAACCTCCCAA 1527 29 100.0 32 ............................. CAACACGTGCTTGGGAATTGATTGGAAAAGCT 1588 29 100.0 32 ............................. TTGTCTCAATACTTTATTTTTTAAGGATGAAG 1649 29 100.0 32 ............................. TGTCCCATTTACCGTGCCAGCGGTAGGGATTA 1710 29 100.0 32 ............................. CATGCAACGCTCGTGATTACCCGCCGATACAT 1771 28 82.8 0 ..........-...A....T......T.A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AATCATACGAGAAAGGAACTCCTTTTTCTAATGTTTTAGGAAATTAAATTAAGGAATCCTTCATCCTTACACAAAATATTTTACGGTCTCATAAAAACATTTTGAATTATAATTAAAAATAAAACTATTGAAAAAATGAGTTTTTGATTTTTACAAAAGCCGGTATTATGGGATCTTTTTAGTG # Right flank : AAATAAATTAGCTAGATGCCTCAAATGAGGCATCTTTTTTGTTAGAAGGATTTTCTATGTAAGCGTTAAATGATAAAATAATAGGAGAGATTATAAAATGAAAAGAGAAAATAATGAGTTCTTTATCAAAAGCGGCTAAAAGTTTATGGGGCAAAAAGGCTATTAAAAATGGGCAAGAGCTTTGGCTGCCATTAATTGCTCACTTAATTGATACTAAAAATGTAATAAATTGGCTCTATAACCATTGGCTAAGTGATAAGGAACAACTAATTATTGAATCTTCTCTTCCAAATCAGAATATTCATGCTTTAGTAAAATTTCTTGGGTGTGTCCACGATTATGGTAAATGCATTCCTGCTTTTCAGGGAAAGCCTTCATATCAAAGATCTAAAGTTCTAGATCAGGATTTGCTAGAAAGATTGCTGCGACAAGGCTTAAGTAGCATTAAGTTAGTGTCGATGGAAAAATCACCTCATGCGGTAGCAGGGGAAGCTTTACTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11267-12577 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZC01000035.1 Lactobacillus acetotolerans DSM 20749 = JCM 3825 strain DSM 20749 Scaffold35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11267 29 96.6 33 ............................C TAAAGCTAGTACGGATACCGATTCTGCAGTTAA 11329 29 100.0 32 ............................. AGTCATTAGTCTTGTTATCTGCTAAGCGATAT 11390 29 100.0 32 ............................. TTATATCGCAATATTATTGTCGGTGGTCGATT 11451 29 100.0 32 ............................. AAAAATAAGGAAAAGCAAATGGATAAGAACAA 11512 29 100.0 32 ............................. AAAAATGGGGAACGAGAAGCGGATTTTATTAG 11573 29 100.0 32 ............................. CAAGTAAACGTACCTTATAGTCAGGATTATTA 11634 29 100.0 32 ............................. TTGTAAAAAGATATTGGACTAAGAAAAGGAGT 11695 29 100.0 32 ............................. GTGATCCAAGTGATACTGACACAGCTTATGAC 11756 29 96.6 32 ............................C GTGTCGCTCTCCATTCGGACGGTCTTGCATGT 11817 29 100.0 32 ............................. TCAGTTCCTAGCGCCACTTCTATGACTACAGG 11878 29 100.0 32 ............................. TTGTAGCAAACGATTTGGGAACAATTATTGCT 11939 29 96.6 32 ............................C ACATACAACCCTAACCACGTTGCACCACCTGA 12000 29 100.0 32 ............................. TACAATCCACGTGCAGAATTTTATACCAATTT 12061 29 100.0 32 ............................. AATATTTATCACGTTGTAGGACGCAAAGGTAG 12122 29 100.0 32 ............................. AAAATTTATGATCTGTACTATCAAGCTGGTAT 12183 29 100.0 32 ............................. ACTGAAAGCGCCGGCGCCGATATCAATTTTGG 12244 29 100.0 33 ............................. ATACACGACCGTTATTTTCAACTACAAAAATAT 12306 29 100.0 32 ............................. ATTCATAGCATTAACAGCCTTTTCGATAGCAC 12367 29 100.0 32 ............................. ACACGCAAAGCTTTTTCAACAATGCGAGCCCA 12428 29 100.0 32 ............................. ATCTGGTCTGTAATGAAGATAGTTCTCAACCA 12489 29 100.0 32 ............................. AATACCGCATCAGGACGTTCTTCTCGCAGGTC 12550 28 75.9 0 .................AT.-T...CTG. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTTGATGAAGATAAAATTTTGTCGATTGGAGCAATTAAGATTTATCATAATGTAGTTTCTAAATTCTACCGCGAAATTAAGGTGGATTGTCAAATTCCAAGTAGTATTTCAAGGTTGACGGGTCTTACAAATTCTATCTTAGATAAAAGTGGAGTTCGCTTAGATCAGGTTTTAAAAGAATTCATGAAATTTATTAAAGGACTTCCATTAGTAGGTTATAATGTCAATTTTGATATTGATTTTTTAGAAAAAGCTCTAAATGATGAATTGAGTCTAAGTATTAATAACCAAGTTATTGATCTAATGAGTCTAGTCAAGAAAAAAGAAAAATTTTTAAATGACTATAAGTTGAAGACTGTTTTACAGCATTACGGTATTAAAAATAAAAGACCACATGAGGCTCTGTCTGATGCAAGAGCAACTTATGAATTGGCTTTAAAACTGTTGAAAAATGGTGTTTTGCAATTTTGAGAAAGGCTTTGTATCAAGGATTTTTTAGT # Right flank : TATTTTTACAGGTCAGTTAGTAGATTTACCGACAATAGCTAAAGAGACTAATAATTTAATTATTACCGCACAACACATGGATTCTTTAAAGCCAGGTAGAGGCATGGGTCATGTTTTACCAGAAGCTCTTGGTCATGTAGGAATTAAAGCCGTCGTTTTGAATCATGCTGAAAAGCCTCTGACGATTGCAGAATTAGATGCAACTATTAAGAGGGCAAAGGAAGTGGGGTTAGCTACTATCGTTTGCTCAGATACAGTTGAACAATGCCGTGCAATTGCTGAATTAAATCCCGATGTCATGATTTGTGAGCCTGATAGTTTAATTGGTACGGGGAATAGCAGTAATGAAGATTATATTAAATCGACAACAGCTGCTGTTCGTTCAGTGAATCCCAATATTTTAATTATGCAGGCAGCTGGCGTAAGTACCGGTCAAGACGTTGAAAAAATTATGCAACTTGGTGCTGATGGCACCGGTGGAACTAGTGGCATTATTAAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16593-16760 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZC01000035.1 Lactobacillus acetotolerans DSM 20749 = JCM 3825 strain DSM 20749 Scaffold35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16593 36 100.0 30 .................................... AGACGCTGGCACAACCAACAATGCAATTTA 16659 36 97.2 30 ...................................T GCTGAATCATCTTTGAAAGATTCATCGTCA 16725 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTTTAGATGATTGTTAGAACAATGAGGTTTAGAAC # Left flank : ATTTGGTGGACAACAAGTATTTAAGGGTAAGCACTACACCAATTATGGTGTTGCAGCCGCTGCAGTTCGCTTAATTCAATCAATTCTTAATGATTCTAGAACTGAATTGCCAGTTTCAAGCTATCAAGCTAAATACGGTACTTATATGTCATATCCTTCAATTGTTGGTCGTGACGGTATTGTTCAATCAATTGACCTGCCATTAACCGATGAAGAAGAAAAACAATTAAAGGCTTCTGCTGAAACAATTAAAGCAAAGTCTGAAGCTTAATTAAGAATAATATTAAGTATATTTAGAAATAGATGGGTTTATAAAGCTCATCTATTTTGTTTATAAAAATTGATAAATACCTAGATTTCAAATACGTTTGTACTATATAATTTAAATAGTAATGGTTATAGCTTAACGATTATTTATAGTTAGTTGCTTGTTCTTAAGAAATTTCATTAACCTTATTTGATTGTGACAGTTTTTATTAAAAATTAATGATAAAATATCG # Right flank : AAGTGCCATAATTAATCAGGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGAACAATGAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //