Array 1 8875-9636 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOFU01000002.1 Escherichia coli strain 458 BN4_458_1_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8875 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8936 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8997 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 9058 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 9119 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 9180 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 9241 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9302 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 9363 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9425 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9486 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9547 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9608 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202780-204393 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOFU01000048.1 Escherichia coli strain 458 BN4_458_1_(paired)_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202780 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 202841 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 202902 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 202963 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 203024 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 203085 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 203146 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 203207 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 203268 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 203329 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 203390 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 203451 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 203512 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 203573 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 203634 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 203695 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 203756 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 203817 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 203878 28 96.6 32 ............-................ CGTTCTGAATCCGATATTCTTCAGCACCTTCA 203938 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 203999 29 96.6 32 ....................A........ ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 204060 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 204121 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 204182 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 204243 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 204304 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 204365 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //