Array 1 2016212-2017583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033905.1 Trueperella pyogenes strain TP4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2016212 29 96.6 32 ............................G GACTCGCCACGACAATGCGCCGATATTTCGGC 2016273 29 100.0 32 ............................. TAGAAAACTAGCGCCACTATTTGCGGCCGCTA 2016334 29 100.0 32 ............................. CGACCGGTCTTCTGGACTGGCTTGAGGCCTTC 2016395 29 100.0 32 ............................. AGGCCGTCAACGTTGAATCGCACGGTCTGGCC 2016456 29 96.6 32 ............................G TCCTGCAGCTCGTTGCTGGCAGTCTGCAGCCG 2016517 29 96.6 32 ............................G AGCGTGGAGAGGTAGACGGGCGAAGATCGATC 2016578 29 96.6 32 ............................G CCAGCCGACAGGTCAGCGCCGAGCTTAATGAG 2016639 29 100.0 32 ............................. GCCGTCAAGGGTGTATTCCCCGGCGGGGTATA 2016700 29 100.0 32 ............................. CGGTGGGGATCGTGGCGGAGTCGGAGGGTTAT 2016761 29 100.0 32 ............................. CCCGTACACCAAGTTCGCGGCCTACGCCCTCT 2016822 29 96.6 32 ............................G TCTGTTACATGGGTTGCGGCGTATTCGCTTGC 2016883 29 100.0 32 ............................. GCCTTGGTGGATGCCGGGATTTCCCTAGGTGG 2016944 29 100.0 32 ............................. TGCTCGACGTCAGCGCGGATATTTACCGCGAT 2017005 29 100.0 32 ............................. GATCATTCAGCGTTAATGTGGCAGCCAGGGTG 2017066 29 100.0 32 ............................. CGCGTGGGCGGGTTCAACCGTTCCAGAGGCTT 2017127 29 100.0 32 ............................. CTGCCCAACGGGCAAACCCGTGACGTGTACGC 2017188 29 96.6 32 ............................T GATGAGCTTGCCCTTTACGTGTGGCTGCTCCT 2017249 29 100.0 32 ............................. TCGTCTAGGGTGAAAACCCCTGCCTTCGCAGG 2017310 29 96.6 32 ............................G GAGGGAAAGATGGACCTTTCGGAATGCGTCGC 2017371 29 100.0 32 ............................. CGCGCTCGGCGCGCTCGTTACCGTTCTCACCG 2017432 29 100.0 32 ............................. AGCGCCCAGCCCACCGACCACACGCCGGAAAC 2017493 29 100.0 32 ............................. GCACACGTGTCGTAAGTGTCGCGGGTCGCGCA 2017554 29 93.1 0 ..........................T.A | C [2017579] ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAAACATCCATTGGGCCATTGTCAGGTAGGCCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACT # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCATGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCAAGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //