Array 1 95721-94656 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOML01000063.1 Escherichia coli strain SC373 NODE_1_length_380662_cov_190.668_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95720 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 95659 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95598 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95537 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95476 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95415 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95354 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95293 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95232 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95171 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95110 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95049 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94988 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94928 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94867 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94806 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94745 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94684 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112776-111222 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOML01000063.1 Escherichia coli strain SC373 NODE_1_length_380662_cov_190.668_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112775 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 112714 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 112653 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112592 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112531 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112470 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112409 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112348 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112287 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112226 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112165 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112104 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112043 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111982 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111921 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111860 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111799 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111738 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111677 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111616 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111555 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111494 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111433 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111372 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111311 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111250 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //