Array 1 163625-162020 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP1268 NODE_1_length_603240_cov_156.664590, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163624 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163563 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163502 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163441 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163380 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163318 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163257 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163190 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163129 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163068 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 163007 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162946 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162885 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162824 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162763 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162701 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162598 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162537 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162476 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162415 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162354 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162293 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162232 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162171 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162110 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162049 29 96.6 0 A............................ | A [162022] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181616-179757 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP1268 NODE_1_length_603240_cov_156.664590, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181615 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181554 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181493 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181432 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181371 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181310 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181249 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181188 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 181127 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181066 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 181005 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180944 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180883 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180822 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180761 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180700 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180639 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180578 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180517 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180456 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180395 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180334 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180272 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180211 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180150 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 180089 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 180028 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179967 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179906 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179845 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179784 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //