Array 1 70114-66320 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCO01000019.1 Moraxella catarrhalis strain 5021466N 5021466N_NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 70113 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 70053 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 69993 28 100.0 32 ............................ TTTATCTGACTAACCTGTATATTTAATATACC 69933 28 100.0 32 ............................ AATAAATATGAGATTGGTGCAAACACCAGCGA 69873 28 100.0 32 ............................ ACTGTGCATGATATTGATATTTTGGAGATATG 69813 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 69753 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 69693 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 69633 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 69573 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 69513 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 69453 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 69392 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 69331 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 69271 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 69210 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 69150 28 100.0 32 ............................ CAATCATTAATGCGTTGGCGGTGGCGTTTTTT 69090 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 69030 28 100.0 32 ............................ TTTATCACAATGCGTCAAACACAAGAAGCATT 68970 28 100.0 33 ............................ ATAAAAGTGCTGGTAATAGCGATGTAACAGCAG 68909 28 100.0 32 ............................ AAAAGCGTGCAAGTAGAATCTAATTTGCCCAA 68849 28 100.0 33 ............................ GCTGATGTTGCTTTCAATTGTGCCGATTTTGCC 68788 28 100.0 32 ............................ ATACATTGCCACCAATATCAGATAGACTTAAA 68728 28 100.0 32 ............................ TGTGCCAAGTCCTGGTACAAGCCCTGATACTT 68668 28 100.0 32 ............................ CATACAAAATTCATTAAAAATAAGCTCTTGTT 68608 28 100.0 32 ............................ TTTATTTTTCGATATTTTGTGCATTTTACACT 68548 28 100.0 33 ............................ GCCCAAGGGGTTTTTAGCACATACACGCCGTCA 68487 28 100.0 32 ............................ TTCGCCTGCGTTTTGACTTGCCTGTATTTTTG 68427 28 100.0 32 ............................ GCTCGGATAAGCTTTGGTTTGTCGTTGTTAGC 68367 28 100.0 32 ............................ AATGCTTGATACTGAATATTTTAGAGATTTTG 68307 28 100.0 32 ............................ TCTAGGCGTTGTTTTTGAAACACTTTGGCAAT 68247 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 68187 28 100.0 33 ............................ ATGTTCTCAGTGATAACACGCCCAACATCGATC 68126 28 100.0 32 ............................ ACCGACCCGCTGTTGATATTACTTTTTCAGCA 68066 28 100.0 32 ............................ GCATTGAGCATTGATTTTTTCACGCACTTTAG 68006 28 100.0 32 ............................ TCTTCACTGGTACGAATAAACATCCAGCTATC 67946 28 100.0 32 ............................ AGTGATAGGGTATTTTCCTGCCACTTTCAAAT 67886 28 100.0 32 ............................ CAGTGTACCACCACCAGTTAGACCATTACCTG 67826 28 100.0 34 ............................ GCACAAGAGATTATTTTGGTTCCGCCAAGCTCTG 67764 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 67704 28 100.0 32 ............................ ACCCAACCCATAGCGTTCGGCAGTGCATAGGT 67644 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 67584 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 67524 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 67464 28 100.0 8 ............................ TACTAACT Deletion [67429] 67425 25 89.3 8 .........................--- TCGCTTAG Deletion [67401] 67403 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 67343 28 96.4 32 ...................A........ CACTCAATGTATAACACCGTCCGCACCAGTGA 67283 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 67223 28 100.0 32 ............................ CTGGCGGCTGGGAAGTTAAACAAACAGCTTAT 67163 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 67103 28 100.0 32 ............................ TATATCCGCAGAGCTTTAGCAGATAATGGTAG 67043 28 100.0 32 ............................ ACGTGTGAAAAAGCGTGTCACTGCATCATAAA 66983 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 66923 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 66863 28 100.0 9 ............................ TTTTGCTGT Deletion [66827] 66826 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 66766 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 66706 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 66646 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 66586 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 66527 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 66467 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 66407 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 66347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 65 28 99.8 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //