Array 1 42319-41208 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALN01000029.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 strain JCM 20190, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42318 28 92.9 32 A.........A................. TGCCAGCCCTGAAACCACAATAGACTATGTTG 42258 28 96.4 32 ..........A................. ACTGACTTCTGGCGTGGATATTAGTTTTTTAA 42198 28 96.4 32 ..........A................. TGGTAGGAGTAAGGCTTTAATATTATTAGTAA 42138 28 100.0 32 ............................ ATCGCCCGTGATAGCATCAACAGCGGCACTAA 42078 28 100.0 33 ............................ TATAGCATTTTCTACATCACGCATTCTAAGTAA 42017 28 100.0 32 ............................ TTGCGATATTAATAACCGCATATAATCTGCTA 41957 28 100.0 32 ............................ TTGGCGATTCTGGTAATGCTCGGTTAAGGCGA 41897 28 100.0 32 ............................ GCATCGATAACGATGCTTGGCTCTGCTGGTGC 41837 28 100.0 32 ............................ ATTAGAAGAATTATAATGATTAGTGAACTGTT 41777 28 100.0 32 ............................ TGTTGAGGCTGGCGAGTCTGTTACAGCTAAAC 41717 28 100.0 32 ............................ GCTCCGCTAAACATCAAGGGGATAAATCCCCT 41657 28 100.0 32 ............................ CAGATGACAATTTCGCACGCTATTCAACTTAA 41597 28 100.0 32 ............................ TCAATTACAACGCTTGGATTATCCATGTTTCG 41537 28 100.0 32 ............................ TGAGTCGGTTTCATCATTAATTTCATCTAATT 41477 28 100.0 32 ............................ GTCATCTGAAATCTGTGACTTCTTGACGTTTG 41417 28 100.0 32 ............................ TTGGAGTTGGTGATGATTTTGAAGTGAACTCT 41357 28 96.4 32 ..........A................. ATAGCTCAAAGCCAGCATGCCACTCTGCATTA 41297 28 96.4 32 .........................C.. TTCGTCATCAAACTTAAGCTGGATAGCCTGAG 41237 28 89.3 0 ..............T.....T.....T. | TG [41213] ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : TTGCAAAAAGAGATCAGCGACAACATAACG # Right flank : TAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCTGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTGGTGATTGAGGCGGGCACGGGGGTTGGAAAAACCTTTGCCTATTTGATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 788-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALN01000047.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 strain JCM 20190, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 787 28 100.0 32 ............................ CACCAGTGCAATAAGAGTTTCCTCAGCCGAAA 727 28 100.0 32 ............................ TTATATGGTTCGTTCTTTAACTACTGGTAAAA 667 28 100.0 32 ............................ ATGCAGCTAATCCCGCAATGCACCATGTGATC 607 28 100.0 32 ............................ TCAGACAGATAGGAAAAAATCAGTTCGTTGGT 547 28 100.0 32 ............................ TCTAAGTCATTGAATACCATTGCTTATCTTGT 487 28 100.0 32 ............................ AATCGCATTTTCAACATCACGCATACGCAAAA 427 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 367 28 100.0 32 ............................ ATTAGTAACATAGGTGTCACCAAGCCACGCCA 307 28 100.0 31 ............................ GAGGTACGATGCCGAAGGTTTAACGAAAAAC 248 28 100.0 32 ............................ GTCAAGTAAAAATAAGACTGCACCAAACAAAT 188 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 128 28 100.0 32 ............................ AACAACTCAGAACTAGGATTTTTAAAATCAGA 68 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : T # Right flank : ATTCACCCTCAATATCGCGGTCAAAGGCTTCTAGTTCACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 65282-65489 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALN01000022.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 strain JCM 20190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65282 28 100.0 32 ............................ AGTCACGAAAGCTGCTACAGGCCACGCATAGC 65342 28 100.0 32 ............................ TTCACGGATAGAGAAGGCTTCTCTTAACAATC 65402 28 100.0 32 ............................ TCTGAGATTACTCTAATTTGCGGTACTGAAGT 65462 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGATATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCATTTATCAACTTGCGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : ACATTGACGTCTAAGCCACTTGGTTTTAGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 44-251 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALN01000014.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 strain JCM 20190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44 28 100.0 32 ............................ ATTTTAGGAATAAATCATATATTTGTAGTTAA 104 28 100.0 32 ............................ CAATTGAGATTACTTTGGCTGGTTGTCGAAAC 164 28 100.0 32 ............................ AATCATCGACATTAATACCGATGAACTTTATG 224 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGCTTAGAAATGCCATATCGGCGGCGGCATCAATGTAATTTTG # Right flank : GTCACCAACAATGCAAAACTGATCTACTTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTTTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCGTTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATTGCACTTCACAACATTCAGGCATCTTACCTATCAGATACCGAGATAGCGTCAGTCGAATCAGGGACGAGCAGTCCTTCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACGATGTTACACTTTTAGTAACTATTTCAGTGCTTAAATCTCAAAAAGTGTAGCTAAGTACACCTGAAACTTACCCAAGTCACCAGACCAAAAAACAAAACCCCAATTCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //