Array 1 108-319 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKA01000002.1 Elioraea sp. Yellowstone NODE_2_length_94909_cov_108.802, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108 29 100.0 32 ............................. GTGCGACGGCGACCTACTACCTCGATCGGGCC 169 29 100.0 32 ............................. CGGTCTTCCTCAGACATGGCTCCCCTCGCGGC 230 29 96.6 32 ................G............ ACCCAGGCGCCGCTGAATCTGGTCGGCCAGAT 291 29 89.7 0 .......T.........A.........G. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GCGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : ACCGCACCCGTGCTCTCCAACCCGTCGCAGCTCATCCACCTTGACCCGCAGGGGGCATCCACACATGACGGACGTGACCGGACCCTGATCGGTATGCGTCCGCCCTGG # Right flank : GAAGATAGTCTTCGGCGAGGTTGCGACCGTCCGGCAGGTCGGTGACGAGCAGATCCTCGAACGCCGCGCCCCAGACCGTGGTGGCGGCGTACTCGCCCAGCACGTCCGCGATGTCTGCCGGGTCGATGCCGGCTGCGGCGCACGCCTTGGCAGTGTGACGGTCCAGGCAGCGCGCCATCGGCTCGCGCCATTCTTCGCGCCGCGTCCAGGCGATCAAGCCGTCGAGGTTGCGGGGGGCTACCACGCCGTCGTCCCTGCCGAGGAACCCGACGGCAAAGGTGCCCGTGCTGCGGCGTGATCGGCAAGGGCGATGCGGCACCTTGGGGATGATCCCGACGGCTTCGCGTGCGAGGTCAATTGGAGGGGCGATCGGAATGCGAACTTCCGTGTCGAAGCCACAACGCAATCCGCTGCCAGATCAACGAGTTAAGCTTGTAGACTAAATCGGCCCAGTATCAAGGTCCGGAGAGAAGCCGCCCTCTGGAGAGCAAAAACGGCCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21621-20131 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKA01000007.1 Elioraea sp. Yellowstone NODE_7_length_51506_cov_103.938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21620 36 100.0 30 .................................... CCTGGCGCTAGCGAAGTCGCGCGCTTCCGC 21554 36 100.0 30 .................................... GCTAGTGTCGACAAGGATGTGCAACAAGCG 21488 36 100.0 30 .................................... AGCATCGGCTGAGGCACGCTCTCCCACTCG 21422 36 100.0 30 .................................... CACCAGCCGCATGGGCACGTTCATACTCAC 21356 36 100.0 30 .................................... GCCGCCGGTGAAGTGTGGCAGGCGCCGCGG 21290 36 100.0 30 .................................... GCAGCGACAACGACCGAGGTGATCCAGCGC 21224 36 100.0 30 .................................... ATACAACTCGGTCAGCTTCTTGGCGGTTTC 21158 36 100.0 31 .................................... CGAGATGGTGCCGTTGTGGAACGAAGCGCAG 21091 36 100.0 30 .................................... GGAATGGCACGTTCAAGATCACGCCGGAGG 21025 36 100.0 30 .................................... TCGGTGGCCGCAGGGTCGTACTCGGCGTGC 20959 36 100.0 30 .................................... AAATCGGCGACGCGCCGGCCCGCCAGCGCC 20893 36 100.0 30 .................................... AGAAGCTCAATGCCGGGCGCTATGACGAGG 20827 36 100.0 30 .................................... CGGCATTATATAGGGACAATCCCTATGCGT 20761 36 100.0 30 .................................... CTTGATCGTGACGTCGTGTGCGCTCAACCA 20695 36 100.0 31 .................................... CCCTGGTGTGGGGGCGCCCGACGAAACCAGC 20628 36 100.0 30 .................................... GCACAGCGACCGATGCGCCGCCACCCGTCC 20562 36 100.0 31 .................................... TTGGCGTGCGACGGGATGCGCCTCGCTCATG 20495 36 100.0 30 .................................... CTGGACGGGTTGCCCTGTGCGTCGGTCTCG 20429 36 100.0 30 .................................... TTCGCTGTCGTCCCGGCGCCGCCGCGCGGC 20363 36 100.0 30 .................................... GCACAGCGACCGATGCGCCGCCACCCGTCC 20297 36 100.0 30 .................................... GCTCACCCACGAAGCGATTTATGAGGGCGA 20231 36 97.2 29 .........G.......................... AACCACAACGTCACGATCCCGTCGGCATC 20166 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.9 30 AGTGTAGCGATGCCCGGTGCGGCCGCAAACCGCAGC # Left flank : GGCTGCCGCGTCGCTGGCGGCAAGCTTCGGGGGAAGGCGGATGCTGCTGCGGCTGCCCGAGGACCCGACGGGCCTGCCCGAGCCAGCGGAGGAGCCGGATGAGGGCGCCGCGCCCGCCCCTTCTTGACCCAATCGCCTGGCGCACCGTGTGGGTGTTCGCGATGTTCGACCTGCCGGTGGAGACGAAGGCGCACCGGCGCGCCTATGCTCGCTTCCGCAAGGATCTGCTGGCGGACGGATTCGCGATGATGCAGTTCAGCGTGTATTTCCGGCATTGCGCGAGCCTAGACAGCGCCACGGCGCATATCCGGCGGATGGGCCTGCGGGTTCCGGCGGAGGGGGAGGTGCGGTTCCTGACGGTGACGGACGCGCAGTTCGCGCGGATCCAGGTGTTCGCCGGAAAACGGCGGAAACCCCCGGAGACTCCGCCGGCGCAGCTGGAGTTTTTCTAGCATGCGCCGGCGGATTCGTGTGCCGTTTCAGGCGGTTGCCGGAAGGGC # Right flank : GTTCGATCCGCAGGACCTCGCGGTGGCGAGGCCCTGCGGATCGAACGGGCGCATCCAAGTCCACGGCGTGAACCGGCGCACACTCAGAACGCCGCCGTGGCGGCAAGCGCGCGGCCGATCTCCATCATCATGTACTCGAACTCGGTGATGAACCGTTCGGTCACGACCACGTGGAAGTAGTCGCCGCCGTTGACGATGTCGTCGCCCTTGCGCGCCCCGAACGGCAGGGTGCGCTCGAAGCCGTGCTTGGCGATGTCCTTGCCGCCCCACTGGTCCAGCACCACCAGCCCCTTCGCGGTCTGGCGCAGGTAGATCGCGGCATGGTTGCCGTGCTTGCGGTTGGGATACCGGCCCGCCTCGTTCCAGCCTGCTGCGATCACCGTGCCCTCGGGCACGGCGAGGTTGCCCTTCACGAGCGGCCCCTTGCGCCAGAACTTCACCTTCGGCGCACCGGAGGCAACCTGCGGCAGGATCGGACACTGGCCGTTGCCCACCTGGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCGATGCCCGGTGCGGCCGCAAACCGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //