Array 1 1271342-1267014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067420.1 Skermanella sp. TT6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1271341 36 100.0 30 .................................... TGGTTGACCTCGACCATGAACGGCTCGGCC 1271275 36 100.0 30 .................................... GCACCATGCCATCGCCGCCGCCTTGCATTC 1271209 36 100.0 30 .................................... GGTCAGGTCGAGCACGCCGGACATGCCGCA 1271143 36 100.0 30 .................................... AAACCCTCCGCACGGACGGATGCACGGTCG 1271077 36 100.0 30 .................................... TCATCCAGGCGCATGAACTGCAGAACATCC 1271011 36 100.0 30 .................................... ACGACGCGTTGCAGGTCGGCAACGCCCTCT 1270945 36 100.0 30 .................................... AGCACGGTGAAGGCGACGACGGCCCGGCGG 1270879 36 100.0 30 .................................... GCTCCAGGCCGACGCCCATCGACGACCGCA 1270813 36 100.0 30 .................................... GACCTCCAATTTGACCAAAGGCCAGTATGG 1270747 36 100.0 30 .................................... ATACCGAGGCCGGATCAACGGTGGTGCGGC 1270681 36 100.0 30 .................................... CAGCACGGCGATACTGAGCGAAGGTCACCT 1270615 36 100.0 30 .................................... GACGACCTGGTGCGCGTGTTCGCCGATCAC 1270549 36 100.0 30 .................................... AAATCCGGCATGGCCGCGCATCTGTCGAAG 1270483 36 100.0 29 .................................... CCTTGCCCCTCGAATTTCCCGCACCATCC 1270418 36 100.0 29 .................................... TAATCGGGCGACGTGACGAGTTGTATGAC 1270353 36 100.0 30 .................................... AGGGCGAGCCGAACACCATCCTGGCGGCGT 1270287 36 100.0 30 .................................... GTCCGACGACATCCCGACCGCGCCGAAGCA 1270221 36 100.0 30 .................................... TGCCGTCGTCGGCGGGCGTCGGCCTGGAGC 1270155 36 100.0 30 .................................... TGCCTGTCTCTCCTGATGTTTGGATATTCC 1270089 36 100.0 30 .................................... GGCTGGCCTCCTCGGTCGTCACCAGCCGAA 1270023 36 100.0 30 .................................... CTGACCGCTCCACCCGTCGCACCACGCGGC 1269957 36 100.0 30 .................................... CCAAAGCGCCCTCAACATGGTGAGTGGAAT 1269891 36 100.0 30 .................................... CGCCATCGGCGGGATGAGCCTGTCCGATCC 1269825 36 100.0 30 .................................... GCATGATGATCACGCCGCCGATGACCGCAG 1269759 36 100.0 31 .................................... ACACCAGCCCCAAAGCCGTATATCTCCCCGT 1269692 36 100.0 30 .................................... TGGATCGCCGCCACCATCGCGGGATACCGG 1269626 36 100.0 30 .................................... GGCCGACGCGATCGCCCCGCCGGACGAGGC 1269560 36 100.0 30 .................................... GCAGTATGACGGCGTGCTTCGGGTGGCGCG 1269494 36 100.0 30 .................................... CCGAACGGGTTTGTCTTCGTTACGAACTCA 1269428 36 100.0 30 .................................... GACCTTGCCCTTGCGGTCGCCGGGCCGCAG 1269362 36 100.0 30 .................................... GCTCGGCGGCCGTCCACCTGCTGACCCCGC 1269296 36 100.0 30 .................................... GCCCAAGCACAGGATGCCGGATCGTATCCT 1269230 36 100.0 30 .................................... CGCCTCATCGCGGTCCTCTTCATCCAGCAC 1269164 36 100.0 30 .................................... CAGTGGTCTCACAGGCCGCAAGGGACACGA 1269098 36 100.0 30 .................................... CCTTCTTCAGCTCGGCCCGGCCGCCATCGG 1269032 36 100.0 30 .................................... GGTGGCCGCCAGCGACCTCAACGACCACGG 1268966 36 100.0 30 .................................... GCGCGAGATCATCGACGCGTACCGCGACTG 1268900 36 100.0 30 .................................... TGGCGGAGGGTCGGCAGGCGCTCGACGCGC 1268834 36 100.0 30 .................................... CGCTGGCTCGTCGCGACGGCACCGGCCGGC 1268768 36 100.0 30 .................................... TCGGCGGCGCACGCCTCGACGGTGCGGTAG 1268702 36 100.0 30 .................................... CGTAGAGGCCGTATCGCACGGATCCCGTCA 1268636 36 100.0 30 .................................... TCGCGCTTGACCTGGGCGCCGCTGGCCTTG 1268570 36 100.0 30 .................................... AGGCGACGATCGCGGACGCGGCCGGCGAGA 1268504 36 97.2 29 .......................A............ TCCGCCATCTCGATCACCACGTCGCCGCC 1268439 36 100.0 30 .................................... GCGAACGCGATGATGATGATCCACAACCGG 1268373 36 100.0 30 .................................... CAGGACGCGGCATGACCACTCCACCGGACG 1268307 36 100.0 30 .................................... AATACACGTTCGGCCAGGGCGACGTGTTCT 1268241 36 100.0 30 .................................... TCCGGGCGCTCGGGCCGCTCGAAAAGCTCC 1268175 36 100.0 30 .................................... TGGTCAGGTCGGCGATTGGGTCCGGCCGGA 1268109 36 100.0 31 .................................... TCGAACTCCGCGCCGTCCTGGCGCTCTGGCG 1268042 36 100.0 29 .................................... AGAATGACTAAAGGGGACCCTGAGGCCCC 1267977 36 100.0 30 .................................... CGCGCGCCCTGGCGGGCCTTCGCCTTGGCC 1267911 36 100.0 31 .................................... TAGAGGCGCACGCCGCCCGGCAGGCTTTCGT 1267844 36 100.0 30 .................................... CGCTCCGGGATGCTCGCGCGGTCGGTGCCG 1267778 36 100.0 30 .................................... ATTCGGGACCGTTGCCCGCACCGCGCCGGG 1267712 36 100.0 30 .................................... CTGGGCGGGCTCCTGGGCCTGCCGCTGGAA 1267646 36 97.2 30 .........................A.......... TGGGCGACAAGGCGTGGTACCAGGGAGACC 1267580 36 100.0 30 .................................... GTCGGAATGGTTCGCTGTCGCCCGGACGAG 1267514 36 100.0 29 .................................... CGCAGCTCATGGATGCCATGGCGCGCGGG 1267449 36 100.0 30 .................................... CCCTTCTGGCTTGCGATGACGATTGCTTGC 1267383 36 100.0 30 .................................... GGCCATGCCGTCACTTGGCACACCGGCAGC 1267317 36 100.0 30 .................................... CGGAGGATGATGTACTCGACCTTTGGGTTG 1267251 36 100.0 30 .................................... TGGCTCACCCTGTCCCTTCTGCTGGCCCTG 1267185 36 100.0 30 .................................... GAGGTGGCCGCCTTCGCCGACGGCATGGCG 1267119 36 97.2 30 ...................................A AGCGCTGCCCTGCCGGTGAAGACGTTGGCG 1267053 36 83.3 0 ..CA.................A.C........T.C. | T,TAC [1267021,1267025] ========== ====== ====== ====== ==================================== =============================== ================== 66 36 99.6 30 CCTGGGGCAGCCCCGATTTCGGGGGCTGACGACAGG # Left flank : CTGCTTGCCGCCCCGCCGCCGCCGCCCAGCATGCTGGTCCAGTTCTCCCAGGCCGCCGTCGGCCCCGACGACCTGGTCCTCAACATGGGAACCGTGGTGTCGATCAGCACGGCCAAGGGAGCGGTCTGGGTCAACCACCCCCGCACCAAAGCTCTCGCCGCCCTCCTGTCCGGCCTGAAGATCGACCTGTGCCGAAAGGCGCTGGACCTCGCCCGCCGCCGCGACGCCGGCGACGGCGGCCGCTCGGTGCCCGGCAAGCCGAACAGCGGCAAGTTCGACGGCGACTGGATCGACCGAGAGTTCAAGGCGATCGCCGACCAGCTCGGCATCGGCCTGGACCGCCTGCACGACATCCTGGACGCCATGACCGAGGCGAACAGAACGGAAATCCAAACCGCCGTTCTACTCGCGAAGCAGGCCGAAACCGCATGAGGGGAGTGAAGTCCGCAGAATTTTTTGGGTGTTTTTGCGAGTTGGATCAATGTTTTAGTACAACATCT # Right flank : GGGCGGCGGAACCCAAGGCGGCAAACAATAAAAAAGGGGCGCCTTCCAGACGCCCCTTTATCGATCCCAGCGGCAATAAGTTGCCGCTCCCCCTGGGGGATGCGGGAAACGCAGCGGCAATCAGGCTGCTTTCTGCGCCTCTTCCGCCGGCACGTCCGTCTGATGGCGCCAGTTCCGATAGAGGCACGACAGCCCTTTCATTTCCTCACCCATGGACTTGCCCGACGCAATGAATGCTGTCCGGAATGCTTCGTAAAGCTCCTGCTCGCTCATATTCTCTCTCCCGCGCATTGCACGTTGATATAATTTATGGCTACACATCCCCCGGACGCTAACGTCGAGTTCAGGGTGAAGTTCCTTTGATACGCCAACGGCGCCCCTAGCGTACTGTCGATCAGTACCATTATGCAGGTACATCTGCAAAACCGCTGACCTCTCCCCAAGGTTTTCGCTCCCGCAGCGGCCACGACACCGCCAGGATCACCGGCTTCTCCCGCACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGGGGCAGCCCCGATTTCGGGGGCTGACGACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.10,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2906816-2905714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067420.1 Skermanella sp. TT6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2906815 37 100.0 39 ..................................... GGCAGGGACCGACTCCGCGGGCATATCGCCAACCATGGC 2906739 37 97.3 36 ........................G............ GAGGCGCTTCAGCGGCGATGGCGCCGACCGAGGCGT 2906666 37 100.0 40 ..................................... CAGAGCGAGGCACGCGGCACATGGCTTCTCGCACGGCGTT 2906589 37 100.0 35 ..................................... GGCAACTTTTCGCCCGTTTCCGGATCCTGATAGGC 2906517 37 100.0 40 ..................................... GGTTGACCACCGCACCGACGAGGCGATAGCCGACCTGCAC 2906440 37 100.0 37 ..................................... GGGCCGCCGCTTCGTCGTTGAAGGGGGCGTAGGACAC 2906366 37 100.0 38 ..................................... GGATGGGCGCCCAATCGGCCCTAGACAGCAGCGGGGTA 2906291 37 100.0 41 ..................................... GGTGGCGACAGCTTCCGGCGAAGGGATGATCGGGCGGGGAC 2906213 37 100.0 40 ..................................... ATGGGCGCCGCCGGGGCAGGGACCGATTCGGCCGGCATGC C [2906200] 2906135 37 100.0 40 ..................................... GACCGCGCGAGGATCGCCGCCCGTGGTGATCGGGGTCAGG 2906058 37 100.0 42 ..................................... CCGCGCCAGGCCCGTATGCAGGCGCGCGGCGCGGACGCAGGC 2905979 37 100.0 37 ..................................... CTCGGCCTTGAGGCGGAACAGGGTACGCTCCAGCTCC 2905905 37 100.0 38 ..................................... CAGGACATCGGCGGGGAGGTGGTTTCGGTGTCGGTATA 2905830 37 100.0 43 ..................................... CCGTGATCAGGCTGATGACGATGGCCTTCTCGTTGCCGTGCAG 2905750 37 83.8 0 .....................T...AC......G.CG | ========== ====== ====== ====== ===================================== =========================================== ================== 15 37 98.7 39 CTCGCGACTACCGCCCCGCTGATGAGGGGATTGAAAC # Left flank : ACAGCCGGTGAGCCGCTATATCGTCTGTTACGACATCATCCATGACCGCCGCCGGGCCCGGGTCGCCGAATGCCTGGAAGGCTGGGGCGTCCGGGTCCAGAAGAGCGTCTTCGAAGTGGTGCTGGAGAAACAGCATCTCGCCGTGATGATCCGTCAGCTCGGCCGATTGATGGACGCCAAGCACGACAGCGTCAACATCTACCCGGTCTGCGCCTCCTGCGACAGCCGCCGGGTGGACCTGGGTGCCACGGTGGAAAAACCGGTTCACCAAACCTACCTCATCCTGTAGGGTAACGGAGATCGGTCGGCGGGCGGCCCGGACGTAACCTCCGGACAAGCCGTTTTTCCGCCGAGGTTACGATCGTGGCTGGATCTTTGAATCTGTTGATATTTTCGGTTCATGGCCTGGCCGCTCAGGCTCGCTCACGGCCGGCGGTGAAGGAGGTTACGATTTTCTGCGTGGTAAACGCCTGATCTGCAAAGAGTTTCGAGGGGTCTCT # Right flank : GTCTCCAGGTACCTTCAATGCAGATCCACGACCTTTTCCGTCGCGGCGGATATAACTTCTTCGCGGGTGAAGCTTCCTTATCGCTCTTTTGCTGGTTGGGAGGGTGCGCGTCCCGCGCACCTCGAGCGGCGGGACGCCGCCCCTCCACGCAAGGCAGTGCTCGGCCCACCGGTGGTTTCATGGCAAGTCCCGTACAAGAAACCGCGGATTGACGTTGACACATGATGGCGCGCCCTCCGCCGGATCGGGGCATGCCGCTCGCACGATGACGGCCATCGTCGCCACGGCACGGCACGGGAGGAATGATCCTTTCGGACCGGGCCGGGCCGGGCCGGCTGCGGCGGAGTGTCATGGGCGGTGCCCCCGCGCCGCGAAGACGGTTGCGGGATCGCGCTTTCGTGATAGTGATCGGGACGGTCAAGGCTGGGAAGCCGTCTCCGCCTGTCCGGATCGATCTTTGATGACATTCGATGACATTCTTCGACGGATCGGGTGCCCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGACTACCGCCCCGCTGATGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 3 2917793-2917226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067420.1 Skermanella sp. TT6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2917792 37 100.0 36 ..................................... ACTCGGGTCATAAGTTGATCGATGGTGATTGGCCCA 2917719 37 100.0 39 ..................................... ACGATGATGTCCTCGCCAACAAGGCGGACGATCCACGGG 2917643 37 100.0 39 ..................................... GTGAACCAGGGGGTGTGGATGCGCTTATCGTGCCGCATC 2917567 37 100.0 39 ..................................... CGGACGACTGGGGACAGCGTGACGATGCGGCCGGCGAAC 2917491 37 100.0 36 ..................................... CCGGTTTTCGTTTCCCATCCCGCCCGTCTAACCCTT 2917418 37 100.0 40 ..................................... CGGCCCGGTTAGAGCCTGATCAGGATTTCAACCATGATCC 2917341 37 97.3 40 ..................T.................. CACCTGCGCAAATCTGCGCATCCGATCAATACAGCAAGAT G [2917308] 2917263 37 86.5 0 ...................CC...G.....GC..... | A [2917241] ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 98.0 39 CTTGCGACTACCGCCCCGCTGATGAGGGGATTGAAAC # Left flank : GCTGGACGCGCGGGCCACGCCCGCCATGGCGCACCGGATGGAGACGGTGGACGGCGACCTGGAGGAGGAGCTGTTCGTCCTGATGACTCTTGGCGACGACCGTGCGGTCGCCGCGACCTATGTCCAGGGGCGGCGGGCGTGGGACCGGGACGGGGGAATGGGGATGGTGGGGGCGGTCTGAGCGGGGCGGGGCGTCTGGGGCCGGGGGAGCGTCTTCGGGGCGGTGGCGGATCTACCCGGCCGTGACGGTGGAAAAACCTGTTCACCTGACCTACCCGATCCGGTAAGCTGCGACGCCGCGCTGACGGCGGGAACCGTTGACGTAACCTCGGGGAAGGTCGTTTTCCCAGGGAGGTTACGATCGGGGTCGGATCTTTGATTCTGTTGATATTTTGCCCTGACCAAGCTGCCCAAGGCTTGCCGATGGCCTGCCGATGAGTGGAGGTTACGATTCCATGGGGGATAAGCCGTTGAGGCAGCATCGGTTTCGGACCCCCGCC # Right flank : AGGGAGCATTTGACCGTCTCGTCCGACGCAGCCGGGACTTGCGTGATGATGCCGATGGAAGTCGGCCATGGCGCTCCGGATGGAGACGGTGGCCGGCGACCTGAACGAGGAACTGCTCGTTCTGATGCCCCAGCGGGGCGACCGCACGGTGGCTGCGACTTACGTCCAAAGGCGGCGGGCGTGGGATCGGGTCGGGTGATGGCGCCGCTGGCCCGAGTGCATCGGGCCGCTGGCTTTCGCCAGTGATCCGCCCACAAACCATCGCTCCATATCGTAATATATTTTAAACAATTGCATACTACTAAGGACATAATTGATCTCTGATTCTCATCAATTAATTCAACATCGAGGTAATAATGGGTCGGCATCACGCCTTGGGATCGTGGCTGACCGCGCTGGGCCGTTCCGGCAGGGCGGATGTCGGCACCGGGGATGCTGGGGATCACTTCCACCTGCACCCGTTCGGGGGCGCCCGGCGCCGGCATCCCGACCCGGCTTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCGACTACCGCCCCGCTGATGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 4 3850304-3850121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067420.1 Skermanella sp. TT6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 3850303 34 100.0 40 .................................. ACCTGTTGCCGCTGTGCCGCAGGATCTCCAGCAGCAAAGC 3850229 34 100.0 41 .................................. ACAGCGATGGATGGAACACCTTGTCGATGTAGTACCGATTC 3850154 34 91.2 0 .T.....G................T......... | ========== ====== ====== ====== ================================== ========================================= ================== 3 34 97.1 41 CCCTCCCAGGCAGAAATGCCTGGGCCTCATTGAA # Left flank : ACACGTTCCAGACCCGCTCGATGTTCCCCGTGATGTGGGAGCTCTCCCGGGCAGAAATGCCTGGGCCTCATTGAAACACGCGCTGGCGGATCAGCAGCTTTCGGTGGGCGGCGCTCTCACCGGCAGAAAGGACGGGACGGGAGCCGAGGCAGCGCTGTGCCCGATCAGGTCGATCCGGCCGGGGGAGTCGGAACGACATCTGATCGCTTTTGTCGTATTCGGAAGCGATCCGCGGTCTGTTTCGGCTTGTCAAAGCGGGATTCAAAATCGTCTTGACAGACTATCGGTTGTGGTGCGTACTGCCGTCTCGCTTGCGAGCGGTTCGATACCGCCGAAAACCCCGGACCCGCTCGCAAGCCGCCAAGTGCTTGATATGGCACGCGGATCTTTGACATTGTGAAACGTATGCGGTGGAAAAATGCCGCTCTGGAACCCCCTCTCGCGACCCGCTCGAAATGGCGGCGAATCTGGTATTGATATCAATGGGTTATGGCAAGGGA # Right flank : GCTTTTCCTTGAACTCCAAATCGGAGCACTCGGCAGTCGCCTCTCTCCAAGGCAGAAAGGCCGGGGCGGGAAGTGAGTTTGAGATGTGCCCGATCAGGTCGATCCGCCCGAGACAGCTGATCCGATGCGTTGCGCCATGGGCGCAACCTACGATCTTCGGCCCGCATCACCTCTGCCCTGCATCGAGCCGTAGGTTGCGCCCATGGCGCAACATAGTGCGGAGAGTGGAACGGCCGGCTGCGATGACCGGAGCGGTTCAGCCTGATCGGGTTCCGCTCTAAGTATACTTGGATGGCGCGGAAGGGATTAGCGAAGAGTGACTTTGATTCGATTTCTCCGCCAGTTCATCGCTGCACCGAAGACAATAGTCATTCCGCCGGTGTGGGTCTCGACCGCAAGGAAGGGGAAGACCAAGGTGCAGTTCACTGCCGCGCTCGACGTCGCCGGAGTCACGCAAGGTGGCTTTGAGCTGATCGGCCGCGCGACCATCGAGATTGCCG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCCCAGGCAGAAATGCCTGGGCCTCATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.70,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 3851803-3850727 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067420.1 Skermanella sp. TT6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3851802 36 100.0 39 .................................... GCCGAACTCCGCGCCGGCGAGGCTGAGCGGAACCGCCGG 3851727 36 100.0 36 .................................... CGGCCGACATGGTACCGGCGCTGCGGGTCGGCCGAG 3851655 36 100.0 36 .................................... GTTGCCTCCATTTTTCCCGTTTTTCTTCGCAATCCG 3851583 36 100.0 41 .................................... CGCCATGAGCGCGACAATCGCGATGGTGGCGACGACCATGA 3851506 36 100.0 37 .................................... GTGGAACATGCCAGCGACGATCAGGGTGACTAGGCCG 3851433 36 100.0 39 .................................... GAGGTGTCGCGCGGCGTCATCGGCGTGACCGCCGCGAAG 3851358 36 100.0 39 .................................... TATGGAGCGGAGGGGCCTTAAGGCGTTGGGATCATTGAG 3851283 36 100.0 41 .................................... CCGTCCAGGTGGATCAGTGGAGCCGAGCGCAGCAGTGCAGG 3851206 36 100.0 35 .................................... AGGTCCTGCACGATTTCCTTCTGCGTGGGCTTCTT 3851135 36 94.4 38 ............................G..A.... AAGTACATATCGACGACGCCGCCGGCCATCATGTTGTA 3851061 36 94.4 39 .......A.....C...................... GGCTCGTTGGAGACCGGCGCGGGGTTCTTGTACAGCTCG 3850986 36 97.2 39 ......T............................. ACCAGGCGAACGGCTGGCCGGTGTCGTTGAGGATTTCGT 3850911 36 97.2 38 .......A............................ AGCTCAGAGCCGACGTAGGCGATGCGGCAGGCCGGCAG 3850837 36 100.0 39 .................................... ACGTTCCAGACCCGCTCGATGTTCCCCGTGATGTGGGAG 3850762 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.9 38 CTCTCCCGGGCAGAAATGCCTGGGCCTCATTGAAAC # Left flank : AGCCATGATGTGGTTCTCACAGTGTGCATCGTGGTCAGGCCGGGTCGGGGAGGTGCGAACTCTCCGGACCGGCCGCCCTGCCGCGACTGCGGAAGGTGGCGGGAGACTGGACCGAATACGGGCGCAGGTCAAGGCGATAGGCTGATTTCGGGAGTAACCCGGCGGGTATGCGCGGCAAATGGTGTTTCGAGACGACATCTGATCGCTTTTGGCGTCTTCGGTAGCGATCCGTGGTCTGTCTCGGCTTTTCAAAGCGGCATTCAAAATCGTCTTGACAGACTACCGGTTGTGGTGCGTACTGCCGTCTCGCTTGCGAGCGGTTCGATACCGCCAAAAACCCCGGACCCGCTCGCAAGCCGCCAAGTGCTTGATATGGCACGCGGATCTTTGACATTGTGAAACGCATGCGGTCGAAGAATGCCGCTCCGGAACCCCCTGTCGCGACCCGCTCGAAATGGCGGCGAATTTGGTAGTGATATCAGTGGGTTATGGCAGGGGAG # Right flank : ACGCGCTGGCGGATCAGCAGCTTTCGGTGGGCGGCGCTCTCACCGGCAGAAAGGACGGGACGGGAGCCGAGGCAGCGCTGTGCCCGATCAGGTCGATCCGGCCGGGGGAGTCGGAACGACATCTGATCGCTTTTGTCGTATTCGGAAGCGATCCGCGGTCTGTTTCGGCTTGTCAAAGCGGGATTCAAAATCGTCTTGACAGACTATCGGTTGTGGTGCGTACTGCCGTCTCGCTTGCGAGCGGTTCGATACCGCCGAAAACCCCGGACCCGCTCGCAAGCCGCCAAGTGCTTGATATGGCACGCGGATCTTTGACATTGTGAAACGTATGCGGTGGAAAAATGCCGCTCTGGAACCCCCTCTCGCGACCCGCTCGAAATGGCGGCGAATCTGGTATTGATATCAATGGGTTATGGCAAGGGACCCTCCCAGGCAGAAATGCCTGGGCCTCATTGAAACCTGTTGCCGCTGTGCCGCAGGATCTCCAGCAGCAAAGCCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCCGGGCAGAAATGCCTGGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 6 4098521-4095241 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067420.1 Skermanella sp. TT6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4098520 32 100.0 35 ................................ CGCTCCAGCTCCTTGGCCGCCGAGCCGGCGCTGAT 4098453 32 100.0 34 ................................ TCCCTGGACGACGGCTACACGCCGTCCAGGGAGT 4098387 32 100.0 35 ................................ ACGGCAACCGCTTTGCCAGCATGGACGGCAGCCGC 4098320 32 100.0 33 ................................ CCGGCATGATCGCCGCGGTGGCCGACCCCGAGT 4098255 32 100.0 35 ................................ ATCGGCTCCGACATGGACCCGCACTGGATAGCCAA 4098188 32 100.0 35 ................................ TCGACGAACCCCACCTTGTGCTTGAAGGCCTGCGC 4098121 32 100.0 36 ................................ CCCCCGGAACAGGGCGGCAATGCGGTGCGCGCGCTG 4098053 32 100.0 34 ................................ CCGGTCCTTCGCGCCGGCGACGCCGAGCACATAG 4097987 32 100.0 35 ................................ CCCCTCAGAGCCATGTTCCCGCCCCTCCGGCGACG 4097920 32 100.0 36 ................................ TGGCGCGGGGCCGCGATGGATGACGGGTTGGCGGCG 4097852 32 100.0 36 ................................ AGGCGCTGCAAGGCGCCGACGCCGATCACCGCGCCG 4097784 32 100.0 34 ................................ GGATCGTTCGCGTTCCAGGCGCTGAACTGCCACG 4097718 32 100.0 34 ................................ CGTAGAAACTGACCGCTATTGCGCGGGCTACCCG 4097652 32 100.0 35 ................................ ATCATCCGCGTCCGCCGCGTCACTCCGACCGCATC 4097585 32 100.0 36 ................................ AGCACATGATCCGCCAGCCCGGCGACGCTTATCAAC 4097517 32 100.0 34 ................................ AGTCCAATATTGTTCGCTATCACTGCGCTACAGT 4097451 32 100.0 35 ................................ TGCGCGGCTATGGTGCGCAGGATCAGCCCGGTATG 4097384 32 100.0 34 ................................ CGCCGCCGCCGACCAGGGTGATCGCGGGGGCGGT 4097318 32 100.0 34 ................................ GCCGACCCGCACTGGACGATGGTCCGCGACTACA 4097252 32 100.0 35 ................................ GCCCGCTGTTCGTCCCTCGGGACGTCGAGCCTCCG 4097185 32 100.0 35 ................................ CCCTGCCAGAGCAGACCCGCACCATGAGCGATGCC 4097118 32 100.0 33 ................................ TTGACGATCACCGCATCGCCGGAAGCGTTGAAG 4097053 32 100.0 35 ................................ GACGCGGACCGGTACGCATACTTGGCGGCGCGGCT 4096986 32 100.0 34 ................................ GGCCGCAGCCGCAGCCCTGATCCGCGCGCGCGCG 4096920 32 100.0 34 ................................ ACTGAAGCGACCATCTCTCCGCCGATCGCATTCG 4096854 32 100.0 34 ................................ ACCGTGCAACTCATGGCACCGGCTGGAGCCACGC 4096788 32 100.0 35 ................................ TTTTTCATGCCAGCATACTGCGAAGCATTTCCGGC 4096721 32 100.0 34 ................................ GCCGAGGCCTCGGCGTCCAGCGCGGCCTGGCCGG 4096655 32 96.9 34 ....................A........... TCCCAGTTGCGCGCACTGTACTTCCTGGCCCCGA 4096589 32 100.0 34 ................................ TCTGCCAGCGGGTTGGGGCTGTAGCCCACCAGGT 4096523 32 100.0 33 ................................ GCCGAGAGCCAGCTGAAGCTGGCCCAGGCCCAG 4096458 32 100.0 35 ................................ AGCGCGGCAGAGGTCGCCGCTGTCCTGGCGATACT 4096391 32 100.0 34 ................................ TTGCCTTGCGCGAGATCGAGATGAGACCGGCCAA 4096325 32 100.0 35 ................................ GTAACTCCCAGGAACTACAGGCCGAAAGTCATCAG 4096258 32 100.0 34 ................................ CGCTAACGTCGCCCCACCCGACCGAATTGAGCGC 4096192 32 100.0 35 ................................ ACCCGGATTTGTTTGGTCGGGCCGTCCAACACCAT 4096125 32 100.0 34 ................................ CGCGTGGTAGCGCGACAGCTCGTCAATCTCATCC 4096059 32 100.0 34 ................................ TGATCGAGCGGGACGAGGACGTCGTCGAGGTAGA 4095993 32 100.0 33 ................................ CATCGCCGCGGACCGCGCGCACGGCCTCGTCCG 4095928 32 100.0 33 ................................ CATCGCCGCGGACCGCGCGCACGGCCTCGTCCG 4095863 32 100.0 33 ................................ ACCGGGACCGTGCCGCCCGACCTGCTGGACCAG 4095798 32 96.9 34 ..G............................. AAGGCGATCCTTTGCGTCGTACGATGCATGTCAG 4095732 32 100.0 34 ................................ TCCTCGGTCAGGACTTCCTCGCCGTCCTTCGCGA 4095666 32 100.0 35 ................................ CAGGTCAGCAAGTGCGGACAGCGCGTCGGATGGGG 4095599 32 100.0 33 ................................ CTCGACCGAGTGAGCCAGCCCGAGCAGCACATC 4095534 32 100.0 33 ................................ TTGTCCAGGCCGGCCAACCGCGACGCCACGAAC 4095469 32 100.0 34 ................................ AAACCGTTGGGTGTGAATATGCTTGATTGCTGCG 4095403 32 100.0 34 ................................ ATGAGCTTCCCGATCAGCGCGCAGAAGCGTATTG 4095337 32 96.9 33 .................A.............. GCGCCGGGCAGCTGCGCGTTCGCAATCAGGCTG 4095272 32 87.5 0 A............T.............AG... | ========== ====== ====== ====== ================================ ==================================== ================== 50 32 99.6 34 GTCGCCCCCTGCGCGGGGGCGTGGATTGAAAC # Left flank : ATGGCGATCCACTCTAAAGGACGTTCCGATGCTGATGCTGATCACTTATGATGTGAACACCGGGGAAAAGGCGGGCCGCCGGCGGCTTCGCCGCGTCGCGCGTGCTTGCCTGGACTTCGGCCAGCGCGTGCAGTTGTCGGTGTTCGAGTGCGAGGTGGACCCCGCACAGTGGACCGCCCTACGGGCTCGCCTGATCGGCGAGATTGATCCGGCGATGGACAGCCTCCGCTTCTATCACTTGGGGGCTAACGCCAAGCGCCGGATCGAGCACATTGGCGCCAAGCCGGTGCTGGACCTGGATGGCCCTCTGATTTTTTGACCCGCGCGAACCCCAAGCGGGCACGTTTTCTCCGGCATGTTCGCGCTGCGGATTTCCTACACGATTCCAATGTGGTATGCCAACACTTACTAGCCAAAGGCCATCCGTCCGGGGCCAGGACGGACAGGTTCGCGCTGCATCGGCCCTAGACCGTTCTTTGACAAATGCATAGCGTAAGGCC # Right flank : ATGTCGGACCCGGCCAGCGCGGCGAAATCCGGTGCTCGACCCCATGTAGAGCTATTCATGCCCAGCGGATGCGACGCTAAACTCCGCGACAGTGACGAGCCCGGTCAAAGCTGGACCGGGGGTGCATCGAACTGGTCAGCACCGCCTCCGCGAGATCGTCGGGCGGCTGGATGCCCAAGGCCACCATCACGGAGCGGAACTCCGCCTCCAACGCCTCGCCAGTAAGGGTTTCGGTGTTGGTGGTCGACGGTGGCGCGTCCATCAATCCATGCAGCTTGGCGAGCGCCACCGCTGCCCCGGTCAGGGCGCCCGGCTGCTCGCGCTGACGGGCAAGTTCGGCGGCTTCAAGAAGGAGATCGGTGACGGTCTCCAGGCTGACGACACGCCGCTCACGCGCTGCTTCCTGTGCTTCGGCCATGGCTGCAATGATCCTTGGATGATTGAGGAGGTCCCGCGCCCGGTAGCTGGCGCTCCGGCGGGTCATCTTCGGCTTGTACGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //