Array 1 1087958-1087141 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046532.1 Mannheimia sp. ZY171111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1087957 37 100.0 32 ..................................... ACAAAAACAGTGAATATGGGTGAAATTAAGAA 1087888 37 100.0 33 ..................................... ACGTGCCATTTTTCATTCTTCTCCATCTCTCTG 1087818 37 100.0 33 ..................................... TAAACTCACTGTCCCTTTAACAAGAGAAGTAGT 1087748 37 100.0 35 ..................................... TAGGACTGTTCTGGAGCATTCCCAGAGTAGTCTCT 1087676 37 100.0 35 ..................................... GCTACAGCAGCATCTTCTTTAAGTTTAGATTTAAC 1087604 37 100.0 35 ..................................... GACCCCCTTCAATCGGAAGGAATATAGCTTCAGTG 1087532 37 100.0 33 ..................................... GTATTTTTAGGGGTTATTTGAAGTGTTTATGTA 1087462 37 100.0 35 ..................................... TTCCATATTGATGTGAGTAAAACGAGATTTAAGAG 1087390 37 100.0 35 ..................................... GTAGTAAATTGGTGTTACTACTAGGTACCCATGAG 1087318 37 100.0 33 ..................................... ACATCACTTAGCGTAATCGTTGTGCTATCTCGT 1087248 37 100.0 34 ..................................... ATCTACAACTACGGCATATTTGTTTGTGTCGTTG 1087177 37 75.7 0 ............T.......T.A...A.....TTACG | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 98.0 34 GTCGAAAGACACCGCCCTGCCTGAAAGGGATTAAGAC # Left flank : CTATTTACACTATTTTAAAAGGCAGCGCAGAAAGTTTGGAAAATCGGGTGAAATTTGTGAAAAATGAAGCTGAATTTGCCGAAGAAACAAAAAAAATCTATTCGGAATCTTGTCATCATTTAGGGAAAAGAATTAAAAAGGAATTTTCAATCGGTCATTGTGAAACACCATATATACCATCTTCTTCACATCAATGTTACGAATTATTGATCGAGGAAGAAAATATTGATATTTCCGCTATTTTGCCAGATTTACAAGGCAAAATTTAAGCCTAAGCAAGCGGTCGTTTTTTTGCAAATTTCTGCAAAATACCGACCGCTATCAAATAACTTTAATCTGACTAGCTGATTTATGCTAAAATAACCACGTTCTTTAATTGTGGAGTTTAATGATTTTGATGAAATTATCACCAAATCAATACCCAGCTATTCAGCCTACTGAATTTTTTGGGAAGCCTATTTTTAACCTTCTGAAAAATAAGGAAAATTTAGGTATCCGCA # Right flank : TTTAAACCTGTTTATTATGCGATTCTAGTCCTATAAATTATTGCCGACAGTTTTTGTCGGTTTTTTCTTTTACAAGCGGTGATTTTTCGCACCCATTTTACAAATTTGTATTCTCCTCTTATTTTCCTCATCTCTCCTAAAATAGCGTTATTGTTAAATATTTAGGAGAGAAAAATGTTCGGTTCTAATCGTGATACACAATCCAGATTCGTAGCACAAAACCGTCCATTTACTCCTTACACTTCAAGTGAAATTGAAGCGTTAATTGCTGGTTATGTAGAAGTGGCTGATGATCGTGCTTATAACGGTCGTTGCTTTGTAAAAGCAGGTAAAAAATGGATCCATAACCTAAATGCTCTTCGCAAAAAATTAAGCGATGCGTATGGACGTTATATTGACGATGAAGAGTTAGAAGCAGGCTATCCTGAGGGTTTTGGCTACGATGTCGCAAACTATTACAGCCGCCATAATCGAATGACATTAGCTGAGAACAAGGAATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACCGCCCTGCCTGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1978632-1976735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046532.1 Mannheimia sp. ZY171111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1978631 32 100.0 35 ................................ ATTTTCTTTTACAACTGTTAGTGTTCTTCTATTAA 1978564 32 100.0 36 ................................ TGATTGTGCCTAAAACAGGACATACATCAGACAGTT 1978496 32 100.0 35 ................................ ATTTGCTGACCGCTAAATAAAAGCCAAGAAGCCAC 1978429 32 100.0 33 ................................ TAGCAAGTATTTAATATGGGTTTTCATCTTCGG 1978364 32 100.0 35 ................................ AAGACCGACAGTAAAAATCATAAGTAGCTCCTGTT 1978297 32 100.0 34 ................................ CGATTGATGCAGGCGGAACAACTGCAGAAAGATG 1978231 32 100.0 35 ................................ CACAAGGGGCATTTGATTCTGCGGTTTCACTGACC 1978164 32 100.0 35 ................................ TAGTGATTTCGGTGGTATGGAAGACGTGTTAGGAG 1978097 32 100.0 35 ................................ TCAACGGCTAATTTAATTAGTTGATTTTGGGGAAT 1978030 32 100.0 34 ................................ ATCACAGAACCATCAAGATATTTTGGAGTCGGTA 1977964 32 100.0 35 ................................ GCATCAACTACTAGGACAGCTGATGCTAAATTATT 1977897 32 100.0 35 ................................ AATGCGGTCGCTTTTGCTCAGAATTTTACAAAAGC 1977830 32 100.0 35 ................................ ATTTTGGCAAATTTCCTCAAAAGTCAGATTGTGAG 1977763 32 100.0 34 ................................ ATTGTTAAGTTGTAATAATATTTTAACTATTTCA 1977697 32 100.0 35 ................................ GCACCAGCTGCAGCAACTGAAGCCATATTCGCAAG 1977630 32 100.0 33 ................................ GCCCTAAGTACGCTGCGGAGGTTCAATTATTAG 1977565 32 100.0 36 ................................ AAAGGCATTGATGGAATGTTGTCTGAAATGACGAAG 1977497 32 100.0 33 ................................ TTTTTGTTTAGGCTAAGGCAATGATACACCTTA 1977432 32 100.0 34 ................................ CGCTTTATCAAGGGAGAAAAACTGACCTGAATCA 1977366 32 100.0 35 ................................ GGTGATTTGTCCTTGTAGATAGCCTACAATTTTAT 1977299 32 100.0 33 ................................ CAGTTAAAGCAGGTGCTGCTTCTCCGTCATATT 1977234 32 100.0 35 ................................ AAATTCCGTTGGTGATAGAATGACATATTCTTCAT 1977167 32 96.9 35 ......................C......... ATCTAATCGCTGCAAAAAAGCGTAATGAGAAGTAT 1977100 32 100.0 35 ................................ AATACAATTAGGAGGTAAATTTGAGACTGTTTATA 1977033 32 100.0 36 ................................ TGCTTGGCAAGCCGCCCTATCGTGCAAGTGTTAGAT 1976965 32 100.0 34 ................................ TCCCCAAACGAGATTTTTTAAAATACGGAGCATT 1976899 32 100.0 35 ................................ ACGAGGGATTAGCACAATGCGATTCTATTATCGCT 1976832 32 100.0 34 ................................ TTAAATTAAATAGCATTGATGTAACTGTTGAAAG 1976766 32 96.9 0 ............T................... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.8 35 GCAGCTACCTACACGTAGCTGTGAGTTGAAAC # Left flank : AGAATTATGATGATGTTAATTACTTACGATATTTCTTTTGACCACCCAGAAGGGCAGAAGCGCCTGAGGCATATTGCCAAATACTGTTTAGATTACGGCATCAGGGTTCAATATTCTGTATTTGAATGCGATGTCACACCCGACCAATGGGTTAAACTCAAACAGAAATTACTCTCCACCTATAATCCGGAAACGGATAGTTTACGTTTCTATCATCTCGGAAGCAAATGGAGAAACAAAGTGGAGCACCACGGAGCAAAAAAAGCGGTGGATATGTTCAAAGATGTTCTAATTTTATAGATTTTCTGTTATCGCTAGCTACTTGTTCTCATCAATATATAGGGAGGCTAGCGATTTTAAAAGTTCTTTAATAATTAATTAGTTAAAAATTTTTATAGCATATTACTGAATGTGCTATACTCAAATCACCCCCTGTAACGACTGCTTTAGCGAAAATCAGGTAATACAACCTGATAGCATAACGTATTTTGATATAGGGG # Right flank : ACTGGTTCGGTAAATCGTGAAAATTCAGGATGTAATGGTCTAACCCATAGCAACAAACCAAAGACTATTTTTGATAAACTCTCTCAAAATGGAGAACAGCAAAATGGTTAAACTTTTTACCCCTGAGTATAAAAAGCAATGTGTTGAAATGGTGTTAGACGGCAAACATAGCGTCAGTCAAGTGTGTAAAATGATGCGAGTCAGCCAATCTGCCCTAAATCGTTGCTTGAATCGTTAGAAGCGGCAATTTCTCGCCGAGCAGCGGGGAATTCAGCGTTTGCGAGAAGGCATTTCCCACTCACAACTGTCCCGTTGTTTTTCGTTGAACCGTTCTACCAGCCATCGTTGAGAAAAATCGTCGCCTAATCAAACGTTGATGAGCTTGCAGGAAACGTTGCTATCCGCCTTTGAGGCAAGCGGTGAAACCTATGGCTCACGGCGTGTATCGCAGGCGGTGACGGATTTAGGAGTAAAAATCCACCTTCATAGAAGGTGGATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTACACGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //