Array 1 7563-2960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOIA010000015.1 Clostridium perfringens strain 1803-2 NODE_15_length_66964_cov_127.026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7562 29 100.0 37 ............................. TTGGAAAATGCTTTTAGAAGAGTATGACAAACCGTGC 7496 29 100.0 37 ............................. CAATTAAAATATTTTTTAACACTTACTTATAAAGAAA 7430 29 100.0 36 ............................. TAAATAGATAATAATTTTTCTTTAGAAACACATTCT 7365 29 100.0 36 ............................. CTTACTTATTGCAAGTACAACACTATATGGCGGTTA 7300 29 100.0 36 ............................. GTAGAAACTGAAACTGTTAAAGTGTTTGAATAGCAC 7235 29 100.0 36 ............................. TAAAAAGCGTAAATATAGGAGGTAAACATGGAGAGA 7170 29 100.0 37 ............................. GGTTATGGGAAGAAGGGTGCAGGTTTGGTAAAAGATC 7104 29 100.0 36 ............................. GGATTAATTGTAGCTACTATATTAGAACTTGTATTA 7039 29 100.0 36 ............................. GATGAAACTTGGTATTACAGAGCAAGAGCTGTTAAT 6974 29 100.0 36 ............................. GGGAGTTTTTAATGCAGATATTAAAATAGTAGGTGA 6909 29 100.0 36 ............................. TTAAAGGTAGCAGCTTTAGTAGTTATTTTGATTTAT 6844 29 100.0 36 ............................. TATCAAAGAAGAAATCGCCTGAAACTAGTTTCAAAC 6779 29 100.0 36 ............................. TAGCATTTTCATGTATTAAATACTTCAACATATCAG 6714 29 100.0 36 ............................. CGATTACAACTTGAAAAAATTGAGTTACAAAAATAA 6649 29 100.0 37 ............................. TATGTAAACAAAATACTAGAGCTACAATGTGATTTTG 6583 29 100.0 36 ............................. GAAGAAAATAAACCTGCTGAATCTGTGGAACATATA 6518 29 100.0 36 ............................. GTGGCAGAAGTTTATATTTTAAGGCAAGTAAAACAA 6453 29 100.0 36 ............................. GTGGCAGAAGTTTATATTTTAAGGCAAGTAAAACAA 6388 29 100.0 37 ............................. GTACTTATGGCTTTAGGAGCATTTGTTACAGGAGTAG 6322 29 100.0 36 ............................. TTCTTTAAAAAAAAATAACAGCTATGCTACGGCTAT 6257 29 100.0 36 ............................. CCATTTAGTTCATTTATTTTCGCAACAAAATTTTTT 6192 29 100.0 35 ............................. CCAGGAGAAAGTCAATTAATAATAAGGTCTGATGA 6128 29 100.0 37 ............................. TTCTCGAACTCTCTATTCCTCCCCAAGCACCTCTCAT 6062 29 100.0 36 ............................. TACCAACAGCCTCAACATTCTTAGGACTAATTAACA 5997 29 100.0 36 ............................. GGAAGTCCGAAGAATCCAAAAATACCGTACAAATGT 5932 29 100.0 37 ............................. AATTAGATAATATGTGCATATGCCACGCACCTCTTTT 5866 29 100.0 36 ............................. TACTTTATCCTCAAAGTATTCCTGGTACTTATCACA 5801 29 100.0 37 ............................. GCATAAATCCAGAAATGGCCTTTATTCACAAAAGTAT 5735 29 100.0 36 ............................. GAACAAGAAATTAAAGAAGAGTGGTACAAGTAATGC 5670 29 100.0 36 ............................. TTTTAATAGTATAGGAGATGAATTAGAATGAGAAAG 5605 29 100.0 36 ............................. TTTAAATTTATTGGAACATTCTTTGTATTATAAAGC 5540 29 100.0 36 ............................. TAGTTTGGTTAGGAATACTAAAGATGGTGTAAGTGG 5475 29 100.0 36 ............................. ATTTCATAGGCTTGGTAACGCTTTAATATATCTGCT 5410 29 100.0 36 ............................. ATTCCAGGAATAGAACCACTCTCACTATATTGCCAC 5345 29 100.0 37 ............................. AGGAAAAACTGATGCAATAGAAAATTATCAATTTATT 5279 29 100.0 36 ............................. TAAGCATTATTTACTGTTTTAAAATTACCAGTAAAA 5214 29 100.0 37 ............................. AGTTGCATGGTCAACTATCCTTGGAAGTCATGAAGCA 5148 29 100.0 36 ............................. GGTAAAAGATTCATGGAACACATAGCTATCGAATTA 5083 29 100.0 38 ............................. TGAAAGATATGAGTTTAATAATGAAAGAAGCACATAGA 5016 29 100.0 36 ............................. GTAGACGTTACTGTTGCTCTTTCTTCTTCTGTTAAA 4951 29 100.0 38 ............................. TTACAAAATAAAAAAGCACCAGGAACTTTAGTTAATTC 4884 29 100.0 36 ............................. AATATCTATGTTATAAACTTTATTACCTTTGAAATC 4819 29 100.0 37 ............................. AACTTGATAATAATGGCGTTGAAAAAGGTGTTGGCGA 4753 29 100.0 36 ............................. TTGTCATTTAAAACACCATCCTTGACACTATTATAA 4688 29 100.0 36 ............................. TTGAACCACTAACATCTGGAATACTAGGATTAAAAA 4623 29 100.0 36 ............................. ATTTATAAAACTCTTGTATAACACCACCATTGAAAG 4558 29 100.0 36 ............................. GTTGATAAACCAGTTGAAAATATATGGGATAAAATA 4493 29 100.0 37 ............................. TTATTTAAGCAATTTGAAGAAGTTTTAAATAAGAATT 4427 29 100.0 36 ............................. AGATAATTTCGATGTTTATGTAAATGAACGTATTGG 4362 29 100.0 36 ............................. TGAAAATATTTAATAATGTTTTTTCTTTTTCATTTA 4297 29 100.0 36 ............................. TTTTCCATTACCTTTACGATTTTGAGTTAAAAGAGT 4232 29 100.0 36 ............................. TGGTCGTTACCTTTGACCTTAGGTTTTTTATTAGTC 4167 29 100.0 36 ............................. ATATGGGAAAATTTCTATATTCATGATGATGCAGGT 4102 29 100.0 37 ............................. GTTGTATAAATGGGTATGATGCGAAGCATATGTATTA 4036 29 100.0 36 ............................. GAAGTATCAGTTTGAACACTACTAAATAAAGAATAA 3971 29 100.0 37 ............................. TTAAAAGCAGAATCCATAGCAGAACTTACATTTGAAA 3905 29 100.0 37 ............................. CAAGGTACTGATTTTTATTCTTTTTGGGGAGATAGAG 3839 29 100.0 36 ............................. AAGAATAGTTATTTTTATTTTCGTTTTCATGATAAG 3774 29 100.0 36 ............................. ACTGCACATGACTTTTTAGATAAAGAGCTTGAGCAA 3709 29 100.0 37 ............................. GGGAAAGTTTTATAGAATGGAAGGATAATTTAATAGC 3643 29 100.0 36 ............................. AAGAAGATTTTAAAACAGAATTATGTTGTTAAAGGA 3578 29 100.0 36 ............................. ACAAAATATTCTGATGAATAAGACATATCTCCTTGA 3513 29 100.0 36 ............................. GAAAGATTACCAGTCAGTAGGAGCTATCATTTGTGG 3448 29 100.0 36 ............................. ATAGTAAACAGCCATTTCAGCACTCTATCATACTTA 3383 29 100.0 37 ............................. GTTAAACCTTTCTCGCCTTTAGCTCCAGGTTCGCCTT 3317 29 100.0 36 ............................. TGGGTTAGAAGGTTTAGATCAGGCTAGTAAAGAAGC 3252 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGTAAGAACAGGAAGG 3187 29 100.0 38 ............................. TTCATCTTTGCAGTTTGAGTTTTAATCTTATCTTGTTC 3120 29 100.0 36 ............................. TATTACATGAGATGGTACATTTATATCATAATGTTA 3055 29 100.0 37 ............................. TTGCTTTTTAAGACACACTCTAAATATGTGCCTTCAT 2989 29 86.2 0 .................GAA....C.... | T [2962] ========== ====== ====== ====== ============================= ====================================== ================== 71 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGTCTATAAGATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //