Array 1 22224-16462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUDH010000010.1 Rothia kristinae strain alder54 NODE_10_length_91157_cov_129.946952, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 22223 28 100.0 33 ............................ GCGGCCGACTGCCAACGCTGCTCGTCCGACTCA 22162 28 100.0 34 ............................ TCACTCCGGGGCCGGTGTCGATGCGATCCGTCCC 22100 28 100.0 33 ............................ GGTCGCCGGGCCGATGGTCATCTTGACCAGGGG 22039 28 100.0 33 ............................ CAGCAGGCCGCAGACCTCCGCGCCCTCGTGGAG 21978 28 100.0 33 ............................ CTCCACCGGCTCCAGCTGGTCATCCACCATCGC 21917 28 100.0 33 ............................ CCCTTGCCCAGATGGTCGCGGATTCACCGGGCA 21856 28 100.0 33 ............................ GCGATTCGTTCGCGGCACGGTTCAGGGCGCGCG 21795 28 100.0 33 ............................ GATCGCCCTTGATTCTGGGCGCACCCTCTCCGA 21734 28 100.0 33 ............................ GGTCGGCCTGAGGGCGTCGGTGGGGTCGAACTT 21673 28 100.0 33 ............................ CAGCGGGATGTACCGGCGGCGGGAGGTCACCAG 21612 28 100.0 33 ............................ GCCCCGCAGCTCCAGGACACCGTGCTGCAGGCG 21551 28 100.0 33 ............................ GGAGAAGACCGCATGACCCGCATCTCTGAGACC 21490 28 100.0 33 ............................ GCACTCGGTGCGATCATGAATGACCGCATCCTG 21429 28 100.0 33 ............................ GATTAGCCTGATTGACCTGCTGCAGGCCGCCGA 21368 28 100.0 33 ............................ CCAGTGAAACGGCGACGGCGGCGGGCCGGGATC 21307 28 100.0 33 ............................ AAGCCGGGGCCGACTAGGCATTTGCCCTAGTCA 21246 28 100.0 33 ............................ GAACGAGAACCGCGACCAGCTGCTCGCCAACGC 21185 28 100.0 33 ............................ CTGGAGAATGTCCAGGCGCGCGCCCAGATTGGC 21124 28 100.0 33 ............................ CCATGTCGTGTTCGCCGGTCTGGACCGGAGGGA 21063 28 100.0 33 ............................ GCCATGCGCCCTCCTTGGGGTATGGGAAGGGCC 21002 28 100.0 33 ............................ TGGCGGGTGAGCAGCGCGGTCTTGGCCTTGGCC 20941 28 100.0 33 ............................ CCTCAGAAGAAGACCACCGTTTACATGCCCCTC 20880 28 100.0 33 ............................ GAGACCGCCGCCGCCCACGCCGCCCGGCGGCTC 20819 28 100.0 33 ............................ CAGCTTCTTAGCCCATCCCGGCATGGACACGTG 20758 28 100.0 33 ............................ GAACGACAGGAGCCCCCGCTGATGCTCGGAACC 20697 28 100.0 33 ............................ CCGGTGGTGGTCTTGCCCATCTCCTCGGCCGCG 20636 28 100.0 33 ............................ GCTGTGACAACTGCTGTTGAAACAGGCTGGGCG 20575 28 100.0 33 ............................ CACATACAGGAACTGACCGCGTGAGCGGTCACA 20514 28 100.0 33 ............................ GCAGGTCACGGCAACACCGGAGATCGTGGACAC 20453 28 100.0 33 ............................ AGGCTGCTCAGGGTCTTGTGGAGCATCCCGGTC 20392 28 100.0 33 ............................ TACGTGGATGCCGTTGCCAATGCGATCAACGCA 20331 28 100.0 33 ............................ CTCGGGTGCTGGCACCAGGACCCCTCCGGCAGC 20270 28 100.0 33 ............................ CGTATCAAACCGGGTCTGGCGCTATCAGAGCCT 20209 28 100.0 33 ............................ GCGTTCACCTGTGCGGCCGTTCTGCCGGTGTTC 20148 28 100.0 33 ............................ GTAGGCCACGAGCAGATCGCCGTTGACCTCCCA 20087 28 100.0 33 ............................ GACGGCCCAGGCGGAGAACGCGGAGAACGTGAA 20026 28 100.0 33 ............................ GTGGGTTGTTACGGGCGTTCTAGGTGCGGTCCT 19965 28 100.0 33 ............................ CTGCGTGCCATTCGCCTGCGCGGGGATGAAGGT 19904 28 100.0 33 ............................ GTGGGTTGTTACGGGCGTTCTAGGTGCGGTCCT 19843 28 100.0 33 ............................ GATCGGCACGGCGGCCCTCGGGCTCGCTAAGTG 19782 28 100.0 33 ............................ CCCCTGGATCTTGGTCTGGATCCAGTTCCACAC 19721 28 100.0 33 ............................ GTACCAGCCGGCCGGTGTCGTGCACGGCGGAGA 19660 28 100.0 33 ............................ GCCGGTGTGCCCGGCCCCGTAGTCCCCCTCCAG 19599 28 100.0 33 ............................ CAAGTTCCTCGTGCCGCGGACGTACCAGCCGGC 19538 28 100.0 33 ............................ GAAGGATGCTGCCGCATTGATTGGCGTCAGCCC 19477 28 100.0 33 ............................ GAAAAGACCGCAAACGAAATTGAAGGGGATACG 19416 28 100.0 33 ............................ GCCAACCATTGTCAAGAGTCTGCCACGTGGTGT 19355 28 100.0 33 ............................ TAAGCCGGACTCCGCGGTGGGGACCCTGATGGA 19294 28 100.0 33 ............................ GCGTGGTCTCGCACTGGCCCGTCTTCGTGCTCA 19233 28 100.0 33 ............................ CCCACCCGCAGGCACCGGCGAACACCCTCCATG 19172 28 100.0 34 ............................ ACTCGTGCGCCCTGCCGACCAGCCCGAACGCCTG 19110 28 100.0 33 ............................ GCCGTCGCCGATGGCGCGGATGCGTTTCACCAC 19049 28 100.0 33 ............................ GACTGGACGCATATAGCGTTCGGCGGTGACAAC 18988 28 100.0 33 ............................ GTTCTCCCGTGACATCAGCGTGACCCAGGACGG 18927 28 100.0 33 ............................ CCCGATGTCGGTTGTGAGCTTGTCGATGAGGTC 18866 28 100.0 33 ............................ GTCATGCGGGGCCCCATCACGGGTGGGGGTCTG 18805 28 100.0 33 ............................ GAAGGTACATGAAGCGCTCGCGGCCGTCATGGA 18744 28 100.0 33 ............................ GCCGATCCAGTTTGTGGTGGATAAGGTGGTGAA 18683 28 100.0 33 ............................ GCACATCGTGTCCATCGGGCTCACGGACAAGCT 18622 28 100.0 33 ............................ GATCGGGACAATGACGCTGTTCCACGCCCACGA 18561 28 100.0 33 ............................ CGTCGCGAAGATGCTGGGCCTGTCGCAGAACAA 18500 28 100.0 33 ............................ GGTCTTCGGGCACCGGGATTGGCACAACACCGC 18439 28 100.0 33 ............................ GAACAGGGCCACACGGGGCATCCCGGACAGCCC 18378 28 100.0 33 ............................ CGCTACACCGCCGCCGCGGGCGGTGCGGGCCGC 18317 28 100.0 33 ............................ GGGCCGCCCGGCGCGCCGCTCGTCGTCAAGCCG 18256 28 100.0 33 ............................ GCTCCTGCAGGCTGGTCGGTTCGTTCACGCTCA 18195 28 100.0 32 ............................ CGTCCCAGCCCACGCCTCATTCCGGCCTGCAC 18135 28 100.0 33 ............................ CGCGATCCTGGATTCCCCGGGTGCTGTGGTGAC 18074 28 100.0 33 ............................ GCCGGAGCAGAACGCCGATGACGGTTCGTGCAC 18013 28 96.4 34 ................T........... CCTCTACGGCGACGCCGACTCCAGCGACCCCAAC 17951 28 100.0 33 ............................ CTGCACGCCGCGCTCCAGCACCCCGCCCCCGTC 17890 28 100.0 33 ............................ GGTCAGATAGTCGACCTCCCCGAACCGCTGGGG 17829 28 100.0 33 ............................ CCTCTCCTCAGGGGCCAGAGTGGAGGGAAACCC 17768 28 100.0 33 ............................ GGACACCACCGGGGCCACCGACGCCTTCAACTT 17707 28 100.0 33 ............................ GGGGCCAGATGATGCGCCGCTGTTGGTGACGGA 17646 28 100.0 33 ............................ GCGCGGTTGCGGTCCTGCGGCCCGGTCGACGCC 17585 28 100.0 33 ............................ GCCCCCGACACCACCAACGAAAGGCAAGACCAT 17524 28 100.0 33 ............................ GGACCTCATCCGCAACGAAAAAACGTACCTGGC 17463 28 96.4 33 ......................C..... CAGCTCCACCATCACGTCCCGGATCCGCATGGG 17402 28 96.4 33 ..........................T. GGGAGATAACGTCTCGTTCTCGTTCGAATGGTT 17341 28 100.0 33 ............................ GATCGCCGCGGCCGCCGGCGCCGGGCGGGTCGA 17280 28 100.0 33 ............................ CTTATGCTCCGGCATCCCCTCCCCCGGCTTCCC 17219 28 100.0 33 ............................ GGGCGGGGTGACCCGGCAGATCCCCATCCACCC 17158 28 100.0 33 ............................ GCTCAAACCGGCGGGTATCGTCCACGCGGACGA 17097 28 100.0 33 ............................ GATCACCCACGCCACGCTCAACACCCGCGCCGG 17036 28 100.0 33 ............................ GCCCGCCTTGTTCTGCTCCTCCGTGCACTTCGG 16975 28 100.0 33 ............................ GAACCACGCATGAACCCCTACCTCCAGGACCTC 16914 28 92.9 33 .........A............C..... CAGCTCCACCATCACGTCCCGGATCCGCATGGG 16853 28 100.0 33 ............................ GGGCGGTGACCGCACCGAAACCTGGACCCTTGA 16792 28 96.4 33 ...............A............ GTCGTGGCTCGGATGCAGTTCTCGCTCGACCGG 16731 28 96.4 33 ...T........................ AGAGATCGCTGACTCCGGCGGGAAGATGGGGTC 16670 28 100.0 33 ............................ CGTCAAGGGCGGCTGCGGGAAGTCCACCCTGGC 16609 28 85.7 33 ...........TT.GC............ CATGGACCACACCCTTCGGGTACTGTTCGAGGA 16548 28 82.1 32 .T..........T.GC...A........ TGCGTGATCCGGCAGAGCCGCAAGTCACCGGC 16488 27 75.0 0 .T.........AT.GC..A....-.... | ========== ====== ====== ====== ============================ ================================== ================== 95 28 99.1 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGAGAGGACGGCGTCGAACCGGGAAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTGCTCACCGCCTGCCCAGCAGGTCTTCGCGGCGACCTGACCAAGTGGCTCTTGGAGGTTAGCCCGGGGACATTCGTCGGCAATGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAAGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCCGTGGATATGGAGGGCCTGACGCTGGTCAGACGGCCCTTGCCGAGCAGCCGATCCGCCGAGAAGAATCCCCGGCGTACCGGTTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGACGATCGCGCTGATGCGGCACTCCGTTAAACTGAATCTGAACCGGCCGACTTCCTGACGTATCCCCAAGTCAGGAAGA # Right flank : CTCGCGTGAGCATCTCGAGCAGGTTGTCAGCGAGTCATACTCCCCAAGCAGCAACCGTCGCAGACCCCGCTACGGCGACATGTAAAAAATTCTCCAGATTTTTTACACGTTCAGCGGACCTGCAAACCTCTTTGACATGTCGTGAGCTCCGCCCCGGAACGCTCCCCCGCGCCCCGACCCCCGAAACACCAGCCCGCTACCATCACCCCATGTCGCACATCACCCCCACCAACGACACCACTTCCACCACCGACGCCACCCGCCCCTCCCCCGCCTTCCTGCCCGCCGCCGAGACCATCGGCCCCGAGCTGCGGGCCTTCCGCCGGGAGCTGCACCGCCAGCCGGAGCTGGGCACCCACCTGCCGTGGACGCAGCAGCGGGTGCTGGAGAAGCTGGAGGTCCTGCCCCTGGAGATCACCACGGGCCGATCCCTCACCTCCGTCACCGCGGTGCTGCGCGGGCAGGGTCGGCCCGCCGCCGCATCCGCTGACACCACCACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //