Array 1 471-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYR010000188.1 Acidithiobacillus sp. BN09-2 Contig188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470 29 100.0 32 ............................. TAGTGGACGCGGCTGGAGAACTAACTTCAACC 409 29 100.0 32 ............................. GAGCCATGCGTCATAGCCAATGCCAGCGGTCC 348 29 100.0 32 ............................. GCAGCGGCTCGCTTGGGTTTGCCGCTGTGCCG 287 29 100.0 32 ............................. CTGGCAAGCGTTCTGTTGCCTGTTCTAGATCC 226 29 100.0 32 ............................. GTGCCATCGGGTACAACGGCAGTGGTTTTTGA 165 29 100.0 32 ............................. CAATCCATATCCCCTGACGGAAAATCGCTCAC 104 29 100.0 32 ............................. GCGGCAAACTCCGCGTCCGGCTCGGCTATGAC 43 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : ACGCTTGCTGGAGCGTATCATCCCTGGCATAGAAGACATGCTTGCGGCAGGTGAAATCACGCCACCAGAACACTTTAAAGAACAGATTGGTCCCGCCATTCCCAACCCGGAGTCTATTGGTGATGATGGTCATCGTGCTTGAGAACACCCCTGCGCGGCTGCGCGGACGCTTGGCCATCTGGCTGCTTGAAATCCGTGCTGGAGTCTATGTTGGAAACTATTCTTCCAAGGTGCGCGGCTATATCTGGAGCCAAGTGGAGGCTGGCATTGGCGATGGAAACGCTGTCATGGCCTGGCGAGCGAACAATGAAGCTGGTTTCGACTTCATTACAATCGGTCAGAACCGCCGTACCCCTGCGGAGATGGACGGTGCGAAGCTCGTGAGTTTTCTGCCGCTGGACGATCAAAATGCTCTTTGACAATTTGCGCAATCAAACCAAAAAATCGGTAGATTTTGGTATTGTTATTTTTCTATGGTAATTCATAATATTGCAAGAAGA # Right flank : GCAGCACTGACCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18580-16348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYR010000037.1 Acidithiobacillus sp. BN09-2 Contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 18579 29 100.0 32 ............................. CAGCACTGACCGGGACATCAGATCCATCTTGC 18518 29 100.0 32 ............................. AGCTAAAAACGCCTTGGGGTCGATCATACATT 18457 29 100.0 32 ............................. GTGTCAATTCCGAACAGCCCCCCGGCCATGGA 18396 29 100.0 32 ............................. TTCTCCCGTCCATATCGAGCACGGCCTGCTTT 18335 29 100.0 32 ............................. ACTCAGATCGCGTACTTGACTAAGGCGTTAGC 18274 29 100.0 32 ............................. CGTCACCAGCAGTGCGTCAATGACCGTTGCCA 18213 29 100.0 32 ............................. AGGAATATTGTCGCTTGGCATCTGTATCTCCC 18152 29 100.0 34 ............................. CAGCAGGAATGGAGTACCCGCCGCCGTTATTCTC 18089 29 100.0 32 ............................. GGATTTTACGGTGGGCTGGTATTCCTCACCGA 18028 29 100.0 32 ............................. GAAGGATACGAATACGGGTACCAGAGCGCCAT 17967 29 100.0 32 ............................. CCACCCTTGCTGCGCTTCTTGCCCAAGTCGCG 17906 29 100.0 32 ............................. GTTTCACTTTTTACGTCGTCCTTGTGTATGCC 17845 29 100.0 32 ............................. CATCAGCCGGTGCTGGCGTCTGATTATGCGGC 17784 29 100.0 33 ............................. TACGCTCCCATGAGTAGGCAGGAAACCGCTGAT 17722 29 100.0 32 ............................. TAGCTGGGCGTGGCAATAGTGAAAGTGCCGCC 17661 29 100.0 32 ............................. ACACGAAAAACTGAAGATCTAATGCCGCCATT 17600 29 100.0 32 ............................. TATCAAGCGACATTGCGAAAAACCGCAGCTTC 17539 29 100.0 32 ............................. CGATGCCGCATATGCCTCGCCGTTGCCGTTGT 17478 29 100.0 32 ............................. TAGCATTCGCCAGCCGCGATCCGTTCTATGGC 17417 29 100.0 32 ............................. TGGTGGCATCAGTCTATGCGTGGCATACCGTA 17356 29 100.0 35 ............................. AAGTTTTATTGGCGCAGTATAGACGAATATAAAAA 17292 29 100.0 32 ............................. CGGACCAGACAGAAAACCGCTGGTATACATGC 17231 29 100.0 32 ............................. GTATCCATCCCCTTTTTAACCGCCTCCTGCGC 17170 29 100.0 32 ............................. TCGCATTCGTCGGCCCGGGCGCTGCGTTGTGC 17109 29 100.0 32 ............................. TGCCATATTGCCTTGTTGCAAATACGAGGCTT 17048 29 100.0 32 ............................. CGTTGCCGCCCTTACTGCTCGAGGCGTTGGAA 16987 29 100.0 32 ............................. GATTGACGCCTAGCGCTTGTGCTGTTGATGGC 16926 29 100.0 32 ............................. TGTACTGATGAATAACGGGTTCAACCCGCAGA 16865 29 100.0 32 ............................. CATGGGAATTAGCTGCATACGGCACCCGCCCA 16804 29 96.6 32 ............................T TCTCGTGAAGGTGGCTACACTTGTGTAAGTCC 16743 29 100.0 32 ............................. TTCTGCGACGGATTGTAGGGATTAACGCCTAG 16682 29 100.0 32 ............................. CTGTTCCACTAGCCCATCAGCGGATGTGCCTG 16621 29 100.0 33 ............................. CACGGCTATATCATAAAAACAAAAAAGGGTGCA 16559 29 100.0 32 ............................. GGAAACTACACGGTTAACATAGGCGACCATCC 16498 29 100.0 32 ............................. CAGAATCAGCCATCGCCAAGGCCGTAGGCAGG 16437 29 96.6 32 ............................T ATATCTAACACGATACAAACCCCAAGTGGGCC 16376 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 37 29 99.8 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : CGGCAAACTCCGCGTCCGGCTCGGCTATGA # Right flank : GTCACCGAGGACAGATGACCACCTCTGATTATGGATTCCCAAAGACTTCTTGGCCCGAAATATGGGCCAAGGCCAAGGATGAAAGCTATACCAGAAAACGACGTCCGACGTTGAAATCTGGTATAGCTTTCTCGCCGAAAACAGGATGCGCCAGAGCAAAAATTGGTGATGCCCTGACCGCAACCGTCACACCGACCGCGCAAGCTGGAAGGTGGGGCTGGGCGCGGGAATCGCCATCACCGGGGTGTCCAGAGGGGGCTTGCCCCCCTTGGCCTACGTGACGTAACGATAGTTACAGCTAGTAGGTTATGCCTTAAGGCGCATCCCAACCTACCGGGCAACGCGAAAACAGGCGTATCCTAGGGGCAGGCGGAGCGTCGCCCGACAGGCCGGAAGCCACCCCTGCAAGGCAACCGTCGCGACCGCTGAAGGCTGGGAATGACCGGGCGCATTGCTGATGGCGAAGGCCGCAAGGACCGGCGCGAACTCGAGGTTCTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //