Array 1 42895-44265 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHC01000026.1 Escherichia coli strain MOD1-EC5945 MOD1-EC5945_26_length_73999_cov_32.0565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42895 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 42956 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 43017 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 43078 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43139 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43200 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43261 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43322 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43383 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 43444 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43505 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43566 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43627 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43688 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43749 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43810 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 43871 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 43932 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 43993 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 44054 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44115 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44176 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44237 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62344-63164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHC01000026.1 Escherichia coli strain MOD1-EC5945 MOD1-EC5945_26_length_73999_cov_32.0565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62344 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 62405 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 62466 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 62527 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 62588 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 62649 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 62710 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 62771 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 62832 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 62892 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 62953 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 63014 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63075 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63136 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //