Array 1 2681800-2682681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2681800 30 100.0 34 .............................. GAAAAATAACTTTTGAAGACACTATAGGATTTAA 2681864 30 100.0 34 .............................. TCTATTGGTGTAACTTCATCATATTTTGAATCAG 2681928 30 100.0 37 .............................. AGATTCACCCAAGGCAGACAAAGGCATTATTTGGGTT 2681995 30 100.0 36 .............................. TAGCAAAAGAAGTTGAAAGCAATACACCAGTTTTAA 2682061 30 100.0 36 .............................. TCCTTAGTCTTTACAAGTCTTCCATCTATAGACTTG 2682127 30 100.0 34 .............................. TAATATTCCGGCCACCTATCTTTCCAATTGACAG 2682191 30 100.0 36 .............................. CTTATGAAGGAAATGGAATTTTATAAGAAACAAAAT 2682257 30 100.0 38 .............................. TAATAAGTCAATTACATTAGTTCAATATCAAGCTGGAG 2682325 30 100.0 36 .............................. TAATCTAGCTTATTTAATGATTTAACATAAGCACCT 2682391 30 100.0 35 .............................. TAAAGAACTGCTATTGCTAATGTGCACCAATTTTC 2682456 30 100.0 36 .............................. CTTGCTATTCGCAAAGTTCCAAGTTGGCCGTGCCAA 2682522 30 100.0 36 .............................. AATTGCAGATATTCTTAAAATAACACGCTCTGCTGT 2682588 30 100.0 34 .............................. CTTTTTTAACCTTGCTTAACTTCACCCATACTTG 2682652 30 83.3 0 G.......A.....A.G....C........ | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 98.8 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : CACTTATAATTACATGATATGGGTTGAACAATAACATGAGATGTATTTAAATCATTTAAAAGTAATGAATTTGGCGAAGTAAGAACAATGTTGAACATTAACATGAGATGTATTTAAATATGTTTTTAACTGTATTATAAAAAGCACAGTGTGTGTTGAACATTAACATGAGATGTATTTAAATTATAAGAAGTCTGTAAATCTAATAAATTTATATTGTTGAACAATAACATGAGATGTATTTAAGCAGAGAACGCAAATCTGTGATTTGAAGTGAGTAGTTTACTCTTTAGAGAATAAGAGAAGGAGTTTTATAAATTGAATCTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTGTTTTATATTTATTAAAAAACGTAATCACTTGGAAAACTTTATATAGAACATTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTTGTACACAATCTGAAATTAAAGCGATGTAACTATTAATATTGAAAATACGAATGATGCTCTTTGAAAACTAAATAATGCGGTGTTAAATGATAATCTCATTTTGATTAATCTTAATCAACTAAATTGAAAATTATGATATAATCAATAATAGATAATTAATGATAGTATAATTGTGTGAAGTAAGGATGATTTATATGTTATTGAATAGTAGTAACAAACATATATATAAGTGCACAGGGAGGTATATAAAATGATAGTATTATATATTATTTTATGCTCAATATTAGTGTGCTTTATAGTTGAGTATACTGTTATCTGTAGCCGTTTTAAGATAGCATCTTATAATAAGGGTCAAAAACAAGATGTGATTATCGTACTTGGGTATCACGTAAAAAAGGACGGTGATGTATCACCAATTTTACGTGAACGAATAAATAAAGCAGCAAAGTTATATCATGAAGGAATTGCTGGAGTAATAATATGTTCCGGTGCAGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2683919-2684210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2683919 30 100.0 34 .............................. ATATTTCCATAATCCTTTCTTATTCTGTCTTTGA 2683983 30 100.0 37 .............................. GCAGTAAGAACTCTTTCACCCTTATGAAGTCTTGCTA 2684050 30 100.0 34 .............................. TGGTATTAGCCTTTAGTTCTCTAATTGCTTCCTC 2684114 30 100.0 37 .............................. TAGAGGGAAAAATAAAAGCATGCACAAAACATAAGCA 2684181 30 93.3 0 ...............G..G........... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ATCTAAATTTCCGCATGAATACCTAATAATAGGAGTTGGAATGATTTATCTTTATTTATACACTCAGATGTTCATAAACAACTTACGTTATCATAAATGTAAACAATAAAGTTAAGGCATCATATTATTTAATGAAATAAATGAAAAAACGAATAATTTTTTAAGCACCGTATTATTCAAAAACTGAATTTTATGGTGTTTTTGCGTCGCAATACAAAGATATTGTAAAGTTAGATATATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGTTCTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTGACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGTTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAAGAAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATAGGTGTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TGTATTTAATACATTTTCTAAAGTATTACCCATATGTTGAATAATAAGAATCATTAAAAGTCTTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATAGAATATGATAGGTAAGTAACTTATCATTAACAAAGATAATAATATTTTTAAAATAAAAGTAGAATAATCGGTTATATTAACTAAAGGCTATATGGTATAATATAGATAAATTTGTATAAAGAGGTGCATAAATGGAATTTTGGGAACTGATTGCAACAGTGATGTTGAAAAAAGACATATATTTTGAAGATTGTGGATATATAATAGGGAAAAATATAAATAAAAGTATGCTTTTAGATAAGAATTTAAAAGAAATGCATCCCCAAAAACAGTACAAAAATTATGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAAGATAGGTTGTATATTTTTAATATTAGAGGTTTAAGTAAAGAATTTATATATAAAATAGAAAC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 2697681-2698499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2697681 30 100.0 34 .............................. TTAGTACATTCCAAACCACAGTTATGAGGTAGAC 2697745 30 100.0 36 .............................. GACATATTTGGATTAACTGAAAGAAGAGTAAGACAG 2697811 30 100.0 36 .............................. TTATCATATAACCTTCTTTCCTTCTCCATCATATGT 2697877 30 100.0 34 .............................. AATAAAATATCACCTTTACATAAATATATAGCTT 2697941 30 100.0 38 .............................. GTTGATAACAATAAAGATATGGCTATACAAATGTTAGT 2698009 30 100.0 35 .............................. CTTTTATATCTCCATAATGCATATGTCTAACTTTA 2698074 30 100.0 36 .............................. TAACAACCATTTCTTAAAACTAGATCTTCTTTTATT 2698140 30 100.0 37 .............................. CATTATAAATATTAAGCAAGAGTACCAGGAAGCATTG 2698207 30 100.0 36 .............................. TTGCATAACTCTCACTTATGTTTAACTTTCTGGCTA 2698273 30 100.0 36 .............................. TATTCTATTTTTATGCCTCTATCGCCTATGTATAAT 2698339 30 90.0 36 A.......T.......A............. AGCAAATCAAATAAATTACTTTGCTGAAACATATAA 2698405 30 90.0 35 ........T.......AA............ GTATTAGAACATAGAGCAAATAACCCTTCATGGGC 2698470 30 86.7 0 ........A.......A...........TC | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 97.4 36 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : GAAGGTTTTGTTTTAAATACAAATGGAGAAGAATCAATCATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTCAAAAAGATTTGTATAATGAAGTTAGATTTGATATTCCAAATGCAAGGCTGATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACCTTTGCAAAAAACTAGAATGGGTTTATATCCATATCTAGTTTTTTGTTTTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAGTTTTCCAAGTGAATTCAAATTCAAAGCCTATTCTAAGCACTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTTTTTAAAAAGCAAAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGCTATTCTTAGAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGGGAAGCCAAATCTCTGATTTACCGTCTTACTCCTTCGAAAAATAGGAGAAGGAATTTTACATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGTCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATGTATTTATGAAAAATAAGAATAGGTTGGAAAATTTTCTTTTAAACCTTGTGAAATCAATGGTTATATGATATTCTTAAAAATAAGAAATGGCCATTTTACTATGGTTGAGCAGTAACATGAGATGTATTTAAACGGTACAGTCCTTAGGTTCTAGTGGGTATAGAAAAGTTGAGCAGTAACATGAGATGTATTTAAACTTATAAAGTCAATTGCATCTCCTGAAGTGTCACAACCGTTGAACAGTAACATGAGATGTATTTAAACGTAAATGCATTCTCCCATACTTCTGTATTTTTAAGTTGAACAGTAACATGAGATGTATTTAAACGCAATAATATCTGGAGTAATGCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 2698751-2699370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2698751 30 96.7 34 .....G........................ GGTACAGTCCTTAGGTTCTAGTGGGTATAGAAAA 2698815 30 96.7 37 .....G........................ TTATAAAGTCAATTGCATCTCCTGAAGTGTCACAACC 2698882 30 100.0 34 .............................. GTAAATGCATTCTCCCATACTTCTGTATTTTTAA 2698946 30 100.0 35 .............................. GCAATAATATCTGGAGTAATGCTATCTCCATTTAC 2699011 30 100.0 36 .............................. TCTAGTTCTTCTATTTTATTTCCAACATTTTTTAAT 2699077 30 100.0 36 .............................. CATACGCACAGTATTCAATATGGCATATTTGAAAGT 2699143 30 100.0 36 .............................. GCATATTTTCTATAGTCTATTTTTTCCCTTCTATCT 2699209 30 100.0 36 .............................. ATTATATGATGGTAAAACAGAAGGACAAAAGCAAGG 2699275 30 96.7 36 .............................T ATTAAATACTCGCTTTTTACCATATCTGTCATGCTA 2699341 30 86.7 0 ........T......AG...........G. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 97.7 36 GTTGAACAGTAACATGAGATGTATTTAAAC # Left flank : CTTATGTTTAACTTTCTGGCTAGTTGAACAGTAACATAGGATGTATTTAAATTATTCTATTTTTATGCCTCTATCGCCTATGTATAATATTGAACATTAACATAAGATGTATTTAAATAGCAAATCAAATAAATTACTTTGCTGAAACATATAAGTTGAACATTAACATAAAATGTATTTAAATGTATTAGAACATAGAGCAAATAACCCTTCATGGGCGTTGAACAATAACATAAGATGTATTTAATCAGGGAAGCCAAATCTCTGATTTACCGTCTTACTCCTTCGAAAAATAGGAGAAGGAATTTTACATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGTCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATGTATTTATGAAAAATAAGAATAGGTTGGAAAATTTTCTTTTAAACCTTGTGAAATCAATGGTTATATGATATTCTTAAAAATAAGAAATGGCCATTTTACTATG # Right flank : CAGGGAATCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCTTTCATTATTGAGCATAGTATATATAATTAAGTTTTTTCCAAGTGAATTAAAGATAAAAACCTACTCTAGTTATTGAACCATAAGGCTTAGGATAGGTTTTTATTATGAGTTTTCAAAAAAGCAAAATTACCTGGAAAAACTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTGTAAATAAGGAATGGCTATTTTACTATGGTTGAACAATAACATGAGATGTATTTAAATTTGCATTATTTAATTGTATAGCCATTTCTGTTATTGTGTTGAACAATAACATGAGATGTATTTAAATTAATCTGTTAAATCACTCCATACATATTTATTATGTTGAACAATAACATGAGATGTATTTAAATTTTAATCTAGGAGATATAATTACAGGAAATATAGAAGTTGAACAATAACATGAGATGTATTTAAATTTCAAAACTTGTATAAAGCCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATGAGATGTATTTAAAC # Alternate repeat : GTTGAGCAGTAACATGAGATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 5 2699622-2700310 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2699622 30 100.0 37 .............................. TTGCATTATTTAATTGTATAGCCATTTCTGTTATTGT 2699689 30 100.0 34 .............................. TAATCTGTTAAATCACTCCATACATATTTATTAT 2699753 30 100.0 36 .............................. TTTAATCTAGGAGATATAATTACAGGAAATATAGAA 2699819 30 100.0 37 .............................. TTCAAAACTTGTATAAAGCCTTTACTTGTTAGTACCC 2699886 30 100.0 35 .............................. TAATATGTATATAATACTTAATTCAATATGTTTTC 2699951 30 100.0 36 .............................. AGGTAAGAGAGAGGTTAGTTGTGGATATGAGTGTGA 2700017 30 100.0 36 .............................. ATATTTAAGTTTAATAGAGTAATAAGCTTACTTATT 2700083 30 100.0 36 .............................. GATTTCCTATTGGTAGTTGATGCAGGATCTACACAT 2700149 30 100.0 36 .............................. TTTTTTATCATATCTTCTTCTAGCCCAGTACCGTTT 2700215 30 100.0 36 .............................. CCAAAATTTGATTCTTTCATATCATTTATATTGATA 2700281 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.4 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : CAATATGGCATATTTGAAAGTGTTGAACAGTAACATGAGATGTATTTAAACGCATATTTTCTATAGTCTATTTTTTCCCTTCTATCTGTTGAACAGTAACATGAGATGTATTTAAACATTATATGATGGTAAAACAGAAGGACAAAAGCAAGGGTTGAACAGTAACATGAGATGTATTTAAATATTAAATACTCGCTTTTTACCATATCTGTCATGCTAGTTGAACATTAACATAGGATGTATTTAAGCAGGGAATCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCTTTCATTATTGAGCATAGTATATATAATTAAGTTTTTTCCAAGTGAATTAAAGATAAAAACCTACTCTAGTTATTGAACCATAAGGCTTAGGATAGGTTTTTATTATGAGTTTTCAAAAAAGCAAAATTACCTGGAAAAACTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTGTAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACCCAAATCTCTGATTTGGAGTGAGTCGCTTACTCCTTGGAGATAACGAGAAGGAGTTTCATAAATTAAATTTTTCCAGGCATAACAAATTTCAAAACCTATTCTAAACATTGATATATAACGATTAGAATAGGTTTTTATTATGTATTTTAAAAAAGCAAAATTACCTGGAAAAACTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAGGATGTATTTAAATAAGATTAGTGCTAAAGCATCAGCACATTTTGCAGTGCTGTTGAACAGTAACATAGGATGTATTTAAATATGACTTTTTCAGTTTCTCCCCCATCAGGGTCTTCGTTGAACAGTAACATAGGATGTATTTAAATGAAGAACAAATAAAAGAATATAAAGAAAAAGTTAAGGTTGAACAGTAACATAGGATGTATTTAAATTCTATACAACATTATAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 6 2700563-2701185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2700563 30 100.0 38 .............................. AAGATTAGTGCTAAAGCATCAGCACATTTTGCAGTGCT 2700631 30 100.0 35 .............................. ATGACTTTTTCAGTTTCTCCCCCATCAGGGTCTTC 2700696 30 100.0 36 .............................. GAAGAACAAATAAAAGAATATAAAGAAAAAGTTAAG 2700762 30 100.0 34 .............................. TCTATACAACATTATAAAGAAAAATATGGAGTTT 2700826 30 100.0 34 .............................. AATTTTAATATTATTTCTTTATTATCCATTTTAT 2700890 30 100.0 35 .............................. TTTGTAACATTAAAACAATCTTTTGGTAGATATAA 2700955 30 100.0 36 .............................. TCATAAGGAATAGCATTTTGTTTAAATATTATTTTC 2701021 30 100.0 37 .............................. TTCGTACAATCTTTAGTAACTTCTTTAGTTTTATCTA 2701088 30 90.0 38 ........A......GA............. TCAAATTGTTTTTGGAGTCCCTTAATCATTTGTTTGAA 2701156 30 83.3 0 ........A......GA...........GC | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 97.3 36 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : GAGTAATAAGCTTACTTATTGTTGAACAATAACATGAGATGTATTTAAATGATTTCCTATTGGTAGTTGATGCAGGATCTACACATGTTGAACAATAACATGAGATGTATTTAAATTTTTTTATCATATCTTCTTCTAGCCCAGTACCGTTTGTTGAACAATAACATGAGATGTATTTAAATCCAAAATTTGATTCTTTCATATCATTTATATTGATAGTTGAACAATAACATGAGATGTATTTAAGCAGAGAACCCAAATCTCTGATTTGGAGTGAGTCGCTTACTCCTTGGAGATAACGAGAAGGAGTTTCATAAATTAAATTTTTCCAGGCATAACAAATTTCAAAACCTATTCTAAACATTGATATATAACGATTAGAATAGGTTTTTATTATGTATTTTAAAAAAGCAAAATTACCTGGAAAAACTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACCCAAATCTCTGATTTGGAGTGAGTCGCTTACTCCTTGGAGATAACGAGAAGGAGTTTCATAAATTAAATTTTTCCAGGCATAACAAATTTCAAAACCTATTCTAAACATTGATATATAACGATTAGAATAGGTTTTTATTATGTATTTTAAAAAAGCAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAACAATAACATAAGATGTATTTAAATGAGTTTAATATTTCAAAGAACTCATTAACAGTTAGTGTTGAACAATAACATAAGATGTATTTAAATTTATATAATATGGTATTAACGATGGTTCTATACCGTTGAACAATAACATAAGATGTATTTAAATATTATTTCAAATTTAAAATTAGATTCTTTTTTACGTTGAACAATAACATAAGATGTATTTAAATCATTCATCTTCTGCATAAGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 2701438-2701920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2701438 30 100.0 36 .............................. GAGTTTAATATTTCAAAGAACTCATTAACAGTTAGT 2701504 30 100.0 34 .............................. TTATATAATATGGTATTAACGATGGTTCTATACC 2701568 30 100.0 34 .............................. ATTATTTCAAATTTAAAATTAGATTCTTTTTTAC 2701632 30 100.0 35 .............................. CATTCATCTTCTGCATAAGGTTCTATTATATCCTC 2701697 30 100.0 34 .............................. ACAGATTGATGAGGTAAGAACTAAAACTATAGAA 2701761 30 100.0 35 .............................. CGAGTTAACACATCCTTTCCATTAGTCTTAAACTT 2701826 30 100.0 35 .............................. TTGCTAGGCAGTATTTACTATTATCAAGTAAATCT 2701891 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.2 35 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : TCTTTTGGTAGATATAAGTTGAACAGTAACATAGGATGTATTTAAATTCATAAGGAATAGCATTTTGTTTAAATATTATTTTCGTTGAACAGTAACATAGGATGTATTTAAATTTCGTACAATCTTTAGTAACTTCTTTAGTTTTATCTAGTTGAACAATAACATGAGATGTATTTAAATTCAAATTGTTTTTGGAGTCCCTTAATCATTTGTTTGAAGTTGAACAATAACATGAGATGTATTTAAGCAGAGAACCCAAATCTCTGATTTGGAGTGAGTCGCTTACTCCTTGGAGATAACGAGAAGGAGTTTCATAAATTAAATTTTTCCAGGCATAACAAATTTCAAAACCTATTCTAAACATTGATATATAACGATTAGAATAGGTTTTTATTATGTATTTTAAAAAAGCAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : CAGAGAATCTAACTTTGCGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGTCTCATTAATGAGCATAGTACATATATTCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGTCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATATATTTATGAAAAATAAGAATCGGTTGGGAAAGTTTCTGTAAAACCTTATAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGGTTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATTTAGCATTGCTATCCCAGACTATTTTTTTTATTATAGTTGAACATTAACATGAGATGTATTTAAATCTATTTTATTTAAAAAGCCCACTTATTCATCTCCTCGTTGAACAATAACATGAGATGTATTTAAATTTATTTTTAGAACTATTGAAGGAATATATGAATGAAGTTGAACAATAACATGAGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 8 2702202-2702461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================== ================== 2702202 33 100.0 33 ................................. GCATTGCTATCCCAGACTATTTTTTTTATTATA 2702268 33 97.0 33 ..............................C.. TTTTATTTAAAAAGCCCACTTATTCATCTCCTC 2702334 33 97.0 62 ........A........................ TTTTTAGAACTATTGAAGGAATATATGAATGAAGTTGAACAATAACATGAGGAATATAAGCC 2702429 33 87.9 0 ........G............G........A.C | ========== ====== ====== ====== ================================= ============================================================== ================== 4 33 95.5 43 GTTGAACATTAACATGAGATGTATTTAAATTTA # Left flank : ACAATAACATAAGATGTATTTAAATACAGATTGATGAGGTAAGAACTAAAACTATAGAAGTTGAACAATAACATAAGATGTATTTAAATCGAGTTAACACATCCTTTCCATTAGTCTTAAACTTGTTGAACAATAACATAAGATGTATTTAAATTTGCTAGGCAGTATTTACTATTATCAAGTAAATCTGTTGAACAATAACATAAGATGTATTTAAGCAGAGAATCTAACTTTGCGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGTCTCATTAATGAGCATAGTACATATATTCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGTCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATATATTTATGAAAAATAAGAATCGGTTGGGAAAGTTTCTGTAAAACCTTATAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGGTTATTTTACTATG # Right flank : CGAAAGCTTGTCTTTAGGGATGGAAAATTCGCTTCTAAAAGTTTAAAGCATTGATATAAATTTTTTACTATGTAGAACTTGTATTTAAAAATTAAAAATATTATGTAGTTACAAACATAAACTTAGTAGCATATAAAAGCTAATTTAATTCATTTCTATTTCATTCCAATATGTCCCATGTGGATTAAATGCTTTGACAGGCTTCCTAAGAGCATTTTTTTTAAGATGTATTTCATTGCATATCTTAATTAAAAGTTTTATATGCTACTACAGCAATATATAATAATGTATTTTTTATATTGTTAAGATAATAGTTACTATTACTAAAGTTATAAGTATAATGCAAAAATAATTGAAGAAATAAATTAAATGCAAAAGATGGGACTGGAGAACAGTTTGTTGAAAGAGTCCTTGGCTCAATCTCACGAGAAATTGCAGGAATTGAAGACAAGCAACAAACTATTGAAAGAGAGCATAGAGTAAGAACTAGGGATTTTGGT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:-0.69, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAATTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 9 2711797-2712778 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================================= ================== 2711797 30 100.0 36 .............................. AAGTCTATTAAATAATCATCAATAGTCCTTAACTGG 2711863 30 100.0 36 .............................. AAGAACAAAGGTTGTTCCAGAAATAGACGCAATTAG 2711929 30 100.0 34 .............................. ACTTGCTGAAGAACTTGAAATAAGTAAAGGAAGT 2711993 30 100.0 33 .............................. GCTTTACATTCTCCATATTTAAAAGGGCCTTTA 2712056 30 100.0 35 .............................. GCAACCACCCGAAAAAACTTTTCAATATAGATATT 2712121 30 100.0 38 .............................. TTGAATATGGTTGGTACGGTCCTCTACCTCTTTTAGAT 2712189 30 100.0 35 .............................. AAAAGAAGGGAAACCAGTTATAGACAAGATATTGA 2712254 30 100.0 35 .............................. AGTAATACCAAATCTTAAACATGATATGGATAGTA 2712319 30 100.0 36 .............................. ATATTAGCTAACGTGCTTTCACTCAACCATAATTTA 2712385 30 100.0 37 .............................. CACAAAAATATTTGACATTCACTGGGAAAGGTGATAT 2712452 30 90.0 21 ...A..T......................G ATTATTACGTTTATTATTAAA Deletion [2712503] 2712503 30 73.3 217 T......C.......A.......AA..CTG TTTTAAAAGTGACGACTTTTTAGTAGTATTTGTACAAATAACATAGTAGTATATTAATTTAGTTTTAGAAGAATTATTGTTATAACTAAAAAAAGATAGTTTGAATTTCACAAAATTTAAACTATCTTTTTACATTTTAAAATAAAAGCTAAAATTTAAATTAAAATTGTATTAGTAAGTTAGTTGAATATTTGAGTATTTTGGAAATATTAAATAT 2712750 29 73.3 0 .A.A..T...T....T.A..-......T.. | ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================================= ================== 13 30 95.1 50 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : GTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGAAGTCCGTGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAGCCCAAATCTCAGATTTGGTGTGAGTCGCTTACTACTTCGGGAATGGGAGAAGTAGTTTCATTAATGAGTATAGTATATAGCTTATATATAATTGGATTTTTCCAGCGATAATAAATTTTAAAACCTATTTTAAGCATTGATAAATAAGGCTTAAGGTAGGTTTTTATCATATGTTTACGAAAAAACAACATCACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTCTTGAAATTAAGGAATGGCTATTTTGCTATA # Right flank : TGGTAATATGTATTTATAGATATAAATCAATTATAACGTTAATTAAAGGGGGAATAAATTTGGGAGAAATAATTCTTAAATTCATTGAAAATAATAAACTTATGCTACTTACAGTAATGTTATTAATTTTTTCTATTTTTAATAGAAAAAAAGATATAACTTTAGTAAAAAAAGATAAAAAAGGATCTTTTCGTTTAGTTATATCTAATAACGAAAACATATAAAAGAGCCTACTTTTATATGTTTCGAAAATAATTTATATAAGGTGAAAGTGATATTGAGATTAAATTCACCTTATATGTTTTTATTATAACAAAAGTATATACAATAAACTATATAAAAATGATATTTAATGTAAAAAATGAAAAAATGGAGGTGAAATAATGAAAGTATATGAATTAACACTAAAAATATTTCTCCTTAAAGATTTAACAGTGGACAAGTCCTATGAAAAATTAACAGAATTAATTGACAAATCCCTATGTAAAGATGATGAATTA # Questionable array : NO Score: 4.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 10 2722587-2724782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2722587 29 89.7 38 .......AC.....G.............. TGCACTGTAATATCAACTCCTTTTAATTTGATTAATCA 2722654 29 89.7 36 .......AC.....G.............. TAAAAGAAGCTCTATTTTCCCAGTAGGGTATAGCCA 2722719 29 89.7 36 .......AC.....G.............. TAAAATTATCTCTCCTTTTTACTTCAGAATATCTTA 2722784 29 89.7 35 .......AC.....G.............. TCTATCTTTACAGCTACTACACTAATAAAATCCAA 2722848 29 89.7 36 .......AC.....G.............. TTGTTTGTTTGTGTAGACCCACAAGCAACTAATCCA 2722913 29 89.7 38 .......AC.....G.............. AAACTTAGGAAAAATAAAGGATTAACTTTAGAAGAATA 2722980 29 89.7 37 .......AC.....G.............. GATAGCGAGCTCTATGACTAACGGAGAGTGGCAGTGA 2723046 29 89.7 37 .......AC.....G.............. GAATGTAGAGCATTAATTAAATGCAAAAAGAATTTAA 2723112 29 89.7 37 .......AC.....G.............. TAGTAATCCATGACATTACCCCTATATTTTTTACCAA 2723178 29 89.7 37 .......AC.....G.............. TCATAAGCATAAGTTATTACCTCTTCTGTGTCATCAA 2723244 29 89.7 36 .......AC.....G.............. AAGTGTTACTGGGTATGAATGGGCGTCTGAATTTAA 2723309 29 89.7 35 .......AC.....G.............. AAGTTTAAATCATAATCTCCAATTGAATCTATATA 2723373 29 89.7 36 .......AC.....G.............. AAATTAGAATTTATTATTTTTATAGTACTTATATCA 2723438 29 89.7 37 .......AC.....G.............. AATTAAAACTTGGAACAGTAAAGCTGAGGGTGAAAAA 2723504 29 89.7 37 .......AC.....G.............. CAATATCCTGGTTTAGGGTATTTCTTACCTAAGTTAA 2723570 29 89.7 37 .......AC.....G.............. CTTAGTTGTAACCCTTTTCTGATATCAAATTTATCTA 2723636 29 100.0 39 ............................. TATGTCTTAGTAACTTGACGTATATTAGTCTGAGTAGTG 2723704 29 100.0 36 ............................. GAATCAGTACTATAGTCTTCATATATATATCCTATG 2723769 29 100.0 38 ............................. AGCAATAAAAACAAGGCTTTTACTTTTAAAAGGTGAAG 2723836 29 100.0 38 ............................. GTATATTACCTCCCAACAAATATATTTAATTTAATTAG 2723903 29 100.0 36 ............................. AGGTTTTAAGTATAACTACAGAATGAGAAAGTTTAG 2723968 29 100.0 36 ............................. GAATCTTTCCCAAACGCTTGAATGCCAGAACTGGCG 2724033 29 100.0 37 ............................. AAAGTACACATAACCATTATCATTTTTAAAGCACCTG 2724099 29 100.0 37 ............................. TAATATAGATTATTTGTTAGGGAGACCTTCAATAAAG 2724165 29 100.0 37 ............................. AAAGAAAATGAAATTACAGAAGAAGAGTTACCTTTAG 2724231 29 100.0 37 ............................. AAGCAATATGTTTCGTAGGATGTTTTTAAATCAACAG 2724297 29 100.0 35 ............................. GTAGATGGTTTGCTTGGTGTTACATTTGAAGATGG 2724361 29 100.0 37 ............................. GCCATTAAAGAAGCTTTACTAATACTTTTCTTTAATG 2724427 29 100.0 37 ............................. TAAATAACTATATAATAGGTATAAAATAAAGCTTAGG 2724493 29 100.0 35 ............................. GTTAAAGATTTTTTTAATTTATCCCTAACTTTTAG 2724557 29 100.0 36 ............................. GAAATTGAAAATCGTAAACAAGAATGTATAGCTCGG 2724622 29 100.0 39 ............................. TGTAATAAGTTAAAGGCATTAGTGGGTGAAAAACTTACG 2724690 29 100.0 35 ............................. GAAGAAATGAAACGAGCGGTCATAAGTGCTTTAGG 2724754 29 86.2 0 .......A......G............GC | ========== ====== ====== ====== ============================= ======================================= ================== 34 29 94.7 37 TTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TCTATCTTAATCTTTGAAACATAAGGCTTAAGATAGGTTTTTGTTATGTTTTTATAAAAAATAAGAATCAGTTGGGAAAATTTCTTTAGAACTTTGTAAAATCAATGGTTGTGTGATATTCTTAAAATAAGGAATGGCTATTTTACTATGATTGAACATTAACATGAGATGTATTTAAATAATCATGTATTCAACACGATTAGAGGTTGGCGATAAATTGAACATTAACATGAGATGTATTTAAGCAGAGAACTCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTAGAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAAATTTCTGCAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATGA # Right flank : CAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTGAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATCTAAGTTAAAACCTGTAGTTAGTGGAGCAGCAGTTGCGTTGAACCTTAACATAGGATGTATTTAAATGAGGGATTTATATCCAAGAAATAACACCAACGGCTGGTTGAACCTTAACATAGGATGTATTTAAATATGTGTCTTAATATTTAAAAATATATCTTTTTATTTGTTGAACCTTAACATAGGATGTATTTAAATATAGTTACAGCATGGAC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : TTGAACAACAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 11 2725036-2725932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027779.1 Clostridium botulinum strain RF5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 2725036 30 100.0 37 .............................. CTAAGTTAAAACCTGTAGTTAGTGGAGCAGCAGTTGC 2725103 30 100.0 36 .............................. GAGGGATTTATATCCAAGAAATAACACCAACGGCTG 2725169 30 100.0 36 .............................. ATGTGTCTTAATATTTAAAAATATATCTTTTTATTT 2725235 30 100.0 35 .............................. ATAGTTACAGCATGGACTAATGTATGGAGCGTGAT 2725300 30 100.0 34 .............................. AAAACTTGTTGAAATAAGAAAAGAGGTTATTAAT 2725364 30 100.0 36 .............................. AAAGTTATCTCCTAAATTAGAAGGACCATTAGAAGA 2725430 30 100.0 35 .............................. AACAATTTTAAATAGGTTGGAAGAAAGATGGGATA 2725495 30 100.0 37 .............................. ACTTATAGAATTAAATATGATAGAAGATGAAGATTTT 2725562 30 100.0 35 .............................. ACATGTTATCCATACTAATAAGCAGTTAGAAGAAA 2725627 30 100.0 35 .............................. CAAGGTCCTTATAGCTGGCAATATGAAATTAATGC 2725692 30 100.0 36 .............................. CCAACTAACCAAAACAGATACTTATCTATAGTGGTA 2725758 30 93.3 115 ............................GC AGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCATTCGAGGTGAGGAGAATGAGTTTCATTAGATAATTAGGCACTTAGTATTTTAAGATTAGGTACAGTCTGAAAAG 2725903 30 90.0 0 ......TA.....................C | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 13 30 98.7 42 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TAATTTATCCCTAACTTTTAGTTGAACAGTAACATAAGATGTATTTAAATGAAATTGAAAATCGTAAACAAGAATGTATAGCTCGGTTGAACAGTAACATAAGATGTATTTAAATTGTAATAAGTTAAAGGCATTAGTGGGTGAAAAACTTACGTTGAACAGTAACATAAGATGTATTTAAATGAAGAAATGAAACGAGCGGTCATAAGTGCTTTAGGTTGAACAATAACATGAGATGTATTTAAGCAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTGAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : CAAATTAAAATCCGTGATTTTTTTCCTTTAAAATTGTTTGGTTTTTAGAGCGGCGTTGATAATATATCAATTTTTAAGGGAAGTCAGAAATGACTTCCCTTAAGTGGTATTTTGTTTAATTCTATAAAGTACATTAGTTAAAACCTATTTTTTTAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCCTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTCATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTCCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATAT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //