Array 1 59172-59932 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FIJM01000004.1 Streptococcus suis strain SS1015, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     59172	    36	 100.0	    30	....................................	AATTTTTCTTGGCGAGAAACGACTTTTCGA	
     59238	    36	 100.0	    30	....................................	CTCGACCAGACAGATTTGGACAAGTTAAAA	
     59304	    36	 100.0	    30	....................................	AAATATTACTTTTGTAGATGTAACCAAAGT	
     59370	    36	 100.0	    30	....................................	AGAGATACTTGGGCAACACCTTGTCATTCG	
     59436	    36	 100.0	    30	....................................	AATTTTTCTTGGCGAGAAACGACTTTTCGA	
     59502	    36	 100.0	    30	....................................	CACTTCCTTACGCTACTAATTTTCAGTTAA	
     59568	    36	 100.0	    29	....................................	TGGCCAAACGTGGGATCAAAACCATGTTG 	
     59633	    36	 100.0	    30	....................................	AACATCAATGTATTTCTTTTCGACCTTGTC	
     59699	    36	 100.0	    30	....................................	ATCAGTGTTTACTTGCTGAGAATATTCTAA	
     59765	    36	 100.0	    30	....................................	TTCTTCAAGAACTTTTTATACAATACTTGT	
     59831	    36	 100.0	    30	....................................	CTTCTGGTAGTTATCCCCATAACATTTGTA	
     59897	    35	  83.3	     0	.......................T..T.-....TCA	|                             	T [59919]
==========	======	======	======	====================================	==============================	==================
        12	    36	  98.6	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG
# Right flank :  ATAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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