Array 1 7660-7366 **** Predicted by CRISPRDetect 2.4 *** >NZ_APGP01000107.1 Caldicellulosiruptor sp. F32 contig000107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 7659 29 100.0 36 ............................. ACAATTTGAAAATACTTACAGGCCGTCTTGAAGAGA 7594 29 100.0 36 ............................. ATCAAGAAGCAATGCATAAAGCCCGGCTTTCTTACG 7529 29 100.0 37 ............................. TTAACCCTTCAAGTCCGCCTCGCCTCGATATCGACCT 7463 29 86.2 39 G..T...............C.A....... GATTGATACTATTTTTAGAACTTTCATTGTTTTTATACA 7395 28 75.9 0 G.CT......G........C.T..-.... | T,G [7375,7379] ========== ====== ====== ====== ============================= ======================================= ================== 5 29 92.4 37 ATTGTATCTGAACTATGAGGGGTGTAAAC # Left flank : GCATGGTATGTATTTCCTTCCTTTCTTGGGCTTCCATTAAATGCAACCACCTTCATCAATGTTCACCTCACAAGGTTTTTTAAATATTGTTGCTTAAGAATGAGGATAGACTTTTGAGGAGCTTTTGTCAAGACATAGCTTTATACTTTGCATGCTGGTGCTTTTGTTGGGATAGTCTTTTTAGAGGTTTTTGTAGAGTTTTTTGTAAAGTAAAATAGGAAATTTTAAAATGGAGTGTTGAATGAAAAATAAACAGCTTGCATTGTGAGGGATGGTCAAAGGTTTAAAAGGCTTCATAACCAGTTTTATCCTTTTTGCAGCAAACCTATAAATTTAAGCTCAGCCTAAAAAAGACTTTTCTCTCAAGGGATAGAGCCTATTTTTCAAAATATCCTAAAACCTTAACTCCCACCTTGCTGCAAAATACCCCTCTTGAAGAGACTTATGAAATAAGCTATAATGAAAGCAACATCAATTTCTTCCGCCAACTTTTAAAAAGA # Right flank : AAATCAAATTTTCTTAGTCTTCTTCTATAACGTTTCTTCTAAGTTAGTATTTCAATAATCTTTTTTATCACGTAAATACAACTTTAAAAATTTCTTATTTTGAGCTTGGATAGTTTTGATCATATTCTTTGTTCTCCTTTAAAAATTTTATTTGAAAAAGAAGGATTTTTACAGTTAATGTCGAAATATAATAAACAATACAGTTTAACGCAAGAATTTGTTAAAAAAGGAGAGATTGTTTGAGATGAGAGCAAAATTTATATTTGAAGTACACAATGGGTTTAACGAAACCAAGGAACTCCCAGTTTATTATAGAACCTTATTTATGGCTTTTTTAAAAAAAGCACTATCATCATACAATGAGGAGTATTTCAAAAGACTTTATTGGTGGGAGGATAAAAAGAATAAGTGGCAAAAGCCGTTTGTTTATGCGGTAAATTTGCCCAACATGAATTTTTCAGACGATAAAGTGCTGTTCAGAGGAGATATAGTTTTAAACC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTATCTGAACTATGAGGGGTGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 11696-12450 **** Predicted by CRISPRDetect 2.4 *** >NZ_APGP01000122.1 Caldicellulosiruptor sp. F32 contig000122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11696 30 100.0 37 .............................. CCAATAAGATTGATTTCACCTAAATCGTGTATATCAA 11763 30 100.0 35 .............................. AAATGGGCGCTTACAAACCTGCAAGTAGAAGTAGA 11828 30 100.0 35 .............................. CTCTACCGGCTTGCCTGATTTTCCGATTTTTCCAG 11893 30 100.0 36 .............................. TTTTATATATGTGTGAAAAATTTGGTCAAATTCTTC 11959 30 100.0 37 .............................. AAATGTGCAATCACTCTGTCAGTCTTTTCTTTCGCTT 12026 30 100.0 35 .............................. CAATAATTAAATTACCTTGTTGTTCAATGATTTCC 12091 30 100.0 35 .............................. ACATATTCTTCAAATTTTCCATTCTCATCTCTTCT 12156 30 100.0 36 .............................. TCTGGAATGCAAAGAGATTTTAGTGGTATGATGCAA 12222 30 100.0 35 .............................. AAAGAGTTCTTTTTTGCTTTCAGGAACAGGACTTG 12287 30 96.7 35 .............................A TTTGCTCATCACCCATATTTGCATTTGCTTTGATA 12352 30 93.3 39 ...........C.........A........ TTGATATCAACAAGTGCTTGAATTCTGTGGAAACCATTG 12421 30 83.3 0 ...........A.......AA....A...A | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 97.8 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATGGGCATCATTTCCAGATGCATCACCAATTAGAACATCACCAATCTCAACTATTTCCTCTATCAATAGCATCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCAAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTATTAAGGTCAAATTTTATGCAAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGCTATTTTTAATTATGTACTCTGAGATTTGTGATGTATTTTGACTTTTGCATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGAGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGTAAGATTTCTCAAGCCATCTACGG # Right flank : AAATGAAACTGTGAGACCGCTTTTGTGGTATAATTAAATTGGACAAAAAATAAAACAAACTCAACATCTTTGGCTACAGAGTGTAGAATTTTGTTCTGAAAAAATCCATAAATCGGAGTGAAATTGCCTTGAGCTCTGAAATTCCACCAATGGAGCGTGATACCACTTTTAAGTTCTTGCTCAAAGACAAAAAAGAGCTACTTGTGCTTGTAAAAGACATTCTCAGATACAGCTGGGCAGATGAAATAGATGAGGAGTCTATAGAATTTGATGACAGCGAATTTGTAACACAGAAGCTATCCCAGCTCAGAGCTGATATTGTTGCAAAAGCAAAGCTAAAAGGAAGAGAAGTATATTTTTATATCCTGATAGAGAACCAGTCGACAGTGAAAAGGGATATGGCACAGAAGATACTGAAGTACATGGTAAGCCTGTGGTGGAAGGAACTTAGCAAAGGGGCAGAGAACCTTCCGCCTGTTATACCCATAGTTGTGTACAAC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 6183-7006 **** Predicted by CRISPRDetect 2.4 *** >NZ_APGP01000060.1 Caldicellulosiruptor sp. F32 contig000060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6183 30 100.0 38 .............................. GTTGAATGTCCAGTAAACACTTTCTCAGCTGAACCTTT 6251 30 100.0 36 .............................. AAAATTTGGCCCCCTGCCCGCCGCTTGCCTCGCCTT 6317 30 100.0 38 .............................. TCCAGAAGAAGCACTATCCAAAATTAAACAAATTTATG 6385 30 100.0 36 .............................. ACTATGAAATCGGTCATAATTCCATTTTGGTACTGA 6451 30 100.0 36 .............................. AGCTGAGCTTTTTCAACCTGCAATGCTGCTTGCTTG 6517 30 100.0 36 .............................. CACTACTTATTTTACGAATCGACCAACCAGCACTAT 6583 30 100.0 35 .............................. TGCTTGTAAAGAAATTGTAAGAGCATATATCTTGC 6648 30 100.0 36 .............................. TTTCTATGCGTTCTGGCCGTGGTGGTGTAATTGCAT 6714 30 100.0 37 .............................. ACAGGCTGTGGATAATTTTTGCAAGTTATCCATAGAG 6781 30 100.0 35 .............................. TATTCGTATTCGGATTAGGATTCGGATTCTCGGGG 6846 30 100.0 35 .............................. AGGTCATCAAGCCATTTCTCGCCGTATTCAACCGA 6911 30 100.0 36 .............................. GCCGCCAACGTGTAACGCTCGCTTTTGGGGAACTGG 6977 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.7 36 GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Left flank : TTAAACTCAACACCTTTACAAATTTCTTCTTCATTTTCCCAACTCCCCTAAATTTTACCTACAATTTGTATTTTATTTATTATTTTGGTTTTTTCAGTTCAAAAAATATGCGAAGTTGATTTCATGTTAAATTCTTTTACTGGGCTGCTTCAATTAAACTCATACTTGGTTACCTATAACTACTCCGCAAAATCACAAGATGGGTGATTAACAATTTGTATTTTTAAAACACACAAATAGAATATAATTTCATTTTGACCAAAAGTCACATCTGTCGACCTCAGGTAGTAAAATTTTAAGATTTGATCTGTATGCGGTTTCAAGAAGATTTGACATGGTTTTTGCAAAGTTTCTGGCAGCAGCTGGATAGACGGAAGACTTTGAGGTGGCTATATAGCTTGATTTTTCTGGCTTGATGTGAGTTTCCCACAGATGTTTTGATATAAAAACATTGACAGGGGTGTATAATCTTGATATAATAAAATCAAGCTTTTTGACGT # Right flank : CGCTGTGGTTGAGATTGCAAAATTCCTGTATCTATAGTATCAATAAAATTAAGTGTTCTTCTTGGTTTGTTTGATTGAACACTTTTTTCCGATATGTTAAAATTTATTGTTAGAAGTAGTTTTATTAAAAGGTGAATAAAATGATAATTAGGAAAATAGTAAATGGCTATCAACTTGAGAAAATAGTGGACATTCCAGAAGCAGCAAAAAATATGCCTGTTGAACTGATAGTCAGAATACCTTCAAATAAAAGAAAAAAAAGTAAAAAAGGTGATGAAATTCTAAACGAATTGTCTGGTGTGTTTGGCAAATATAAAAACCCTAATTTAATCCCCAGTGAAGAAGAAGCATGGAAGAATACTGTGAGGGAAATATATGAGAAAGAACAAGAAGAAAATTTTAAAACTAATTGATGCCAATGTGATTCTGCGTTTTTTACTAAATGACATTGCTGAGCTTAATCAAATTGCCAAGGAAATTATCAAAAACAATGAAGTATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 51-472 **** Predicted by CRISPRDetect 2.4 *** >NZ_APGP01000067.1 Caldicellulosiruptor sp. F32 contig000067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 51 29 100.0 36 ............................. TTTGACGTTGTAAAGTATTATTTGAGTTTGCCTTTT 116 29 100.0 36 ............................. TGTGTTGATTATGTTTTTGTTGCTCAAAATATTAGT 181 29 100.0 37 ............................. TTGTGTTGATTATGTTTTTGTTGCTCAAAATATTAGT 247 29 100.0 37 ............................. TAACAGATGTATCACCTGCTGTTATTGGATTTTTTAA 313 29 100.0 37 ............................. GGCCATCACTACCACCAGAACTACCTGCAGCATAATT 379 29 100.0 36 ............................. TATTGCTTCTTCACCATAATCACGTAATTTCCAATA 444 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 37 GTTTACATCCCTCATAGTTCAGATAAGAC # Left flank : AGTTCAGATAAGACCGTAGCCTGCCCTTGACAAATACTTTAATAAATTACG # Right flank : AGCACAATGTGAGGAAGCTCTTGCATTGCTCAAGTAGTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCTCATAGTTCAGATAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //