Array 1 460724-458513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATG01000004.1 Streptococcus uberis C8329 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 460723 36 100.0 30 .................................... TAACGAGCTATTAACTCTAGGTTTTGGATG 460657 36 100.0 30 .................................... AAGAATTGTGAGCAATGATAAAGATGTAAT 460591 36 100.0 30 .................................... TACCTAAAACATCTAAACGCTCTTAGAACG 460525 36 100.0 29 .................................... TTACTTGCTTACTTGCAACATAATCATTT 460460 36 100.0 30 .................................... GCATCAATGTAGAGGTCATTTAATGTCTCT 460394 36 100.0 30 .................................... ATCTTCAATCTTCATTTGTAATTACCTCCA 460328 36 100.0 30 .................................... AAGTCCTCAGTTTCAATCGTGCGAGCGGTT 460262 36 100.0 30 .................................... AATAAAGTCGATGCAGAAAACGAGCTTGAA 460196 36 100.0 29 .................................... AAAGCTATTTCGGAAAAAGCTAATGATGT 460131 36 100.0 30 .................................... AGGTTCGTTGATTGTGGAGTTGTAAGCGAG 460065 36 100.0 30 .................................... GTCAAGAACAGACAAAGGGAAAGAAGTACG 459999 36 100.0 30 .................................... AGAAAATTCAAAACCATATGAAGAATTTCA 459933 36 100.0 30 .................................... TAACCAAAACTATAACACAACAACTAAATC 459867 36 100.0 30 .................................... ACTGGTACTTCTTTTAAAATCTGAGTCGCA 459801 36 100.0 30 .................................... ATTGGTTTAACGCTTAATGCAAATTTTGCA 459735 36 100.0 30 .................................... AAGAAATTATTAACAATGCAATGCGCATGT 459669 36 100.0 30 .................................... GTGACCTTACCTTGTCTGGCAGCCATCCAC 459603 36 100.0 30 .................................... GATAACATTGTCAAGAAAAGATTACCCATA 459537 36 100.0 30 .................................... TTCTTTTTCTTGATTAAAAGCGCCCAATCT 459471 36 100.0 30 .................................... GACGCAACACGCACGCAAGAAATTTCTCAA 459405 36 100.0 30 .................................... AATTATGTCCGATAGTATAATCATTGCTGA 459339 36 100.0 30 .................................... GTATACTGAAGAAGCACGCAAGGTCTTAGC 459273 36 100.0 30 .................................... TTTAGGAGGATGTTACATATTGACGACTAG 459207 36 100.0 30 .................................... AAAGTCACTGAATTACAAAAAGAACAGTTA 459141 36 100.0 30 .................................... AATGATTTCATCACTGTTGCGATTGCAGCA 459075 36 100.0 30 .................................... GCGTATGGCGGAGCGGTTCTCACATCAACA 459009 36 100.0 30 .................................... AAGCGTGAAAATGGTTGCTTACCAGTATCT 458943 36 100.0 30 .................................... AAGCGTGAAAATGGTTGCTTACCAGTATCT 458877 36 100.0 30 .................................... TTCCGACTGTTTAAATATGGAAGAATTAAC 458811 36 100.0 30 .................................... AAAAAGCTTATCAAATTTTGACATCCAATC 458745 36 100.0 30 .................................... TTTTGACCATTTCCTTGCAGTTAGCAGCAT 458679 36 100.0 30 .................................... TGGGTGGATTACGATTGACGAAGTTCCCGA 458613 36 100.0 30 .................................... AAGATACCTTTGATAAAATTACTCGTTCGT 458547 35 91.7 0 ....................-.............TT | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : AGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTTTTTGATTTTGTGTGAGTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAATAGTCTTAAAAATGTATGTCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //