Array 1 3061-2434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUFZ01000087.1 Morococcus cerebrosus strain CIP 81.93 MCC93_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3060 32 100.0 36 ................................ CGTAATGCGGACGGGGGTTTTATCCAAGCCAAGCCC 2992 32 100.0 36 ................................ AAAATCCACCGTATCAGAGGTAAACCTCACGCGGAA 2924 32 100.0 36 ................................ AAAATCCACCGTATCAGAGGTAAACCTCACGCGGAA 2856 32 100.0 34 ................................ TGACTGATGGCAGGCGGCATGTGCTGCGCGAAGT 2790 32 96.9 33 ............G................... AAGTGTTTGATGCGCGGCAAATCTAAGTTGTCG 2725 32 93.8 33 G...........G................... AGCGATTCGGGCGGTATGCCGCCGTCTGCGTTT 2660 32 93.8 32 G...........G................... GGATTGATTAAAATGCTACACGGAAAACCGCC 2596 32 90.6 33 ........T......T..T............. AGACGACCTCTACCGTACTGGCGATTGATTTTG 2531 32 87.5 34 .T...T...........A......A....... CCGTAGCCGAGGGAGCAGATGTAGAGGCGCAGGC 2465 32 65.6 0 T.....AT......CTAA.CA.A...C..... | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 92.8 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GGCGGCTGTGTGTTGAAACGTATAAGGCATGAAACTTATCAACATTGATGCGT # Right flank : CAGACGGTGCTTTCCTGATTTAAACCGCCTGTAACCATTTACTTTTTGATGGTTATCTCTGAAAAATTATCTGTAAAATAGGAAATTTTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTGTTCTGATCAAATCAGATTTTCCAGCTTCGGGCTGTCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAATCCTGTTACCAGCGGTGCTGATGAGATTGAAGAGCTGAAAAAAGCCAAATTGAAACTGAAAGACGAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : CAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1703-208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUFZ01000018.1 Morococcus cerebrosus strain CIP 81.93 MCC93_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1702 33 100.0 34 ................................. CGTTTTTGATGGGTTTTTGTGCGGTTTTGTCGTT 1635 33 97.0 33 G................................ TGAAATAGTTATCGGCGACGTAGTTCAAGATGC 1569 33 97.0 35 C................................ TTTCGTAATACCCAAATCGCGGGCATCTTGTTCAA 1501 33 100.0 33 ................................. ATTTTCATATCTAACCCTTAAACAAGTAAATCA 1435 33 97.0 33 A................................ AGCCTTTTGTACGGGGCTGGTCTGAGTTCAGCC 1369 33 100.0 35 ................................. ATGCACCTCCCGAAAGGGCGGTTTTGTCAAAGCAA 1301 33 100.0 32 ................................. CACGTTCAGGGTGTTGGTGCGGTCGAAAACCG 1236 33 97.0 33 C................................ AGGTCGTCTGAAAGACGCCGCAATCAAAAAAGC 1170 33 100.0 33 ................................. ATTATCCTCAATTTGGCGAATAACTTTTGCTGC 1104 33 97.0 32 A................................ TTCGCGGATGGCGAACATAACGGCTTTATTCA 1039 33 97.0 36 A................................ AATCCTTATAAAGCCAAAAAGACCGAAACAGCAGAA 970 33 97.0 32 G................................ ACCTAATTGTAAATACCCGTGTTGATATACGG 905 33 97.0 36 C................................ ACTTGCGTATTCAGATCGGTGTAGCCGTTGCTGACT 836 33 97.0 33 A................................ TAATGAATTCGAGTCCTAAAAAACCAAGTCCAT 770 33 97.0 34 C................................ AAGAACATGGTAAAAATCGCAGCCCAATATTTTT 703 33 100.0 33 ................................. TTTCAGTAGGAATTACAAGTTCGGGTATTCCAT 637 33 97.0 34 G................................ AGGTGGTTCAGACGACCTTAACCAAAGCGACAGG 570 33 97.0 33 C................................ TTTTTCCGATGTTTTGCCCTTTTTAAAATCCCT 504 33 97.0 33 G................................ ATCAATCAGATTGCACGAGGCGTTAGAAGTGTT 438 33 97.0 33 C................................ GATGGTGCGGACGGCTGTGTATAGCAATAACTG 372 33 97.0 33 C................................ CCATTTCTGCGCCGCGTCCTCTTGGGCGTAGTA 306 33 97.0 33 G................................ CAGTGTGTATTTGTGTGTAAAGATTTTGACGTA 240 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 97.9 34 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGCGACATCGCGCCAGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCGAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGAATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTTGCGTTCGCGCTTTTCTTGGGAGCCTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CGCGAACGCTCTCGTAAGGGTCTAAGAACGTGTTCATTGTCTCAGCCTCTGCTGTAAACTATCGGCATGAACAGAAAAACCTACCCAAGCGATATCAGTCGCGAGCAATTTGCGCCTCTCCTTCCCCTGCTGGAAAGTGCCCGTAAACGCACAGCGCCACGCCAGGTGGACTTGTACGATGTCTTTTGTGCCATTCTCTACCTGCAAC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //