Array 1 63924-68515 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFC01000015.1 Streptococcus ruminantium strain DTK285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 63924 36 100.0 30 .................................... AATTTTGCTGATAGTGACTTTATCTACAAA 63990 36 100.0 30 .................................... ATGGCTATGCCTAGGGTTCCTACTGGGTGA 64056 36 100.0 30 .................................... AACTAAAGCTAACTACGAACGTGAATTTTA 64122 36 100.0 29 .................................... TTGTGATAAGAGCTTTTCTGAGCCGTTCA 64187 36 100.0 30 .................................... TAACTGGTACAGCACCAACCAATTCAACCT 64253 36 100.0 30 .................................... TGTTTGTAGCGTTAACAAACGCAAAGGTAC 64319 36 100.0 30 .................................... AAATAAAGATCACCGTAACTATTTGAGTTC 64385 36 100.0 29 .................................... TCTTGTCCGCTTTCTTAGTGTCTTGCTTT 64450 36 100.0 30 .................................... CTGCCATTTCTGATCCGGAAATTTATGTTG 64516 36 100.0 30 .................................... TTTTGCTGAGTTGGAAGCGATGGAGATGGG 64582 36 100.0 30 .................................... TTCTTTGGCTGTTGTTTTAAGCGGTACACA 64648 36 100.0 29 .................................... TTCTTCAAAATACATGGCATATATACCAC 64713 36 100.0 30 .................................... ACGGACCTTCCAAATCTGGGATTGTCGCAC 64779 36 100.0 30 .................................... CCGGAAACTCTAAAACCATATACGGGTTGT 64845 36 100.0 30 .................................... CTTCTCGGCTGCTTTCACCGTACTCGACCT 64911 36 100.0 30 .................................... TATCTGCCACAAAGAATGCGTTTTCGTTCT 64977 36 100.0 30 .................................... ACGAATCAAGCTGATTCGCATTTTGCAGGA 65043 36 100.0 30 .................................... TCAAAGGTCAAGCTAAGAAAAGCGATTCTA 65109 36 100.0 30 .................................... CTATTTCTGGTAAAGCGATAGAAATATGGA 65175 36 100.0 30 .................................... AAAGATACTAACTGGAACAAGACAAAATCC 65241 36 100.0 30 .................................... CTTAAAAGCAAAAGCAACGCCGGATTGTTG 65307 36 100.0 30 .................................... CTTGTACTGTTCGGTCTTGCCATCAAGGAC 65373 36 100.0 30 .................................... TTTCCTTCTGCGATTTGACAATAGCACCTT 65439 36 100.0 30 .................................... CTCTGCTGCGATTGATGAGCTGTACGAGTA 65505 36 100.0 29 .................................... TAATTGAAAAAATGGCTTAGTAGATTGTG 65570 36 100.0 29 .................................... GAACTAGCTGGCACTGCCATGCGTTTCAA 65635 36 100.0 30 .................................... CAGGAGCGAGCAGGAGTGGCACGCAGTCTA 65701 36 100.0 30 .................................... AGATACACTTCATCTTGAATTAGTTCATCA 65767 36 100.0 30 .................................... TTGAGTTTAAGCATTTAGAGGGCAAAATAG 65833 36 100.0 30 .................................... CAGGTCCACTGAAGTAGGGCGGGTCTACAA 65899 36 100.0 30 .................................... TACCAGAAGAGGCACCGCCATAGTGTATTT 65965 36 100.0 30 .................................... TCACGTTGGTTGGAGTCGCGCTTAGATTGC 66031 36 100.0 30 .................................... CAGCCTCCATCAATGGTCCACCGAACTCTA 66097 36 100.0 30 .................................... CTTATCTAGTCAAATGTTTTAAAATTATAT 66163 36 100.0 30 .................................... TTCTTTAACTTCATATGCTGACACCATCAG 66229 36 100.0 30 .................................... TTTATTTTTAGAATACTAATTTGATATATC 66295 36 97.2 30 ..................................G. TGATTTTACTTGAAATTATTAAATTTTTAG 66361 36 100.0 30 .................................... AAGACATTGAGTATATAGTTGAGGGGTTTG 66427 36 100.0 30 .................................... AAATGAGGACATAGAGAAAAGACCTACTAA 66493 36 100.0 30 .................................... CGATGAAAGATTATTTGATTCACGAGAGCG 66559 36 100.0 30 .................................... TTTAACAACGTTAGTAATGCAGTCGGAAAT 66625 36 100.0 30 .................................... TTTGCTCATATTTTTCCTTTCTTAAATTTG 66691 36 100.0 30 .................................... ATTCACGCATCACTTCCATGCAGTCCGAAT 66757 36 100.0 30 .................................... TTTTCTTTAGGCTCTTTCTTCAACAACCTA 66823 36 100.0 30 .................................... GATAAGGGAAGCTCTTAAAGAAGGGGTATT 66889 36 100.0 30 .................................... CCTTCGCTTGGATTTGATGGCTCGTCTTCT 66955 36 100.0 30 .................................... AAAAAAGAACAACCGATTCATCCTAGCTTT 67021 36 100.0 30 .................................... AAAAAAGAACAACCGATTCATCCTAGCTTT 67087 36 100.0 28 .................................... TAAAGCAATAGCAAAGCAATTGAAAGGA 67151 36 100.0 30 .................................... GTGATGGTTTAGTTGCATTAAGTGCCATTG 67217 36 100.0 30 .................................... CGATACTTCCGTTTACCTTGGCATTAGCCT 67283 36 100.0 30 .................................... CTGAAGCTTGGCTGGAGGTTAATTCTGAAG 67349 36 100.0 30 .................................... CAGCTGCATTAGCAAAAGTTACTGATAAGG 67415 36 100.0 30 .................................... AAGGTCAAACTTTATCTAAAGAAAATCAGT 67481 36 100.0 30 .................................... TGGATTAGTTCCATTTAGTTCTCCTTTTTT 67547 36 100.0 30 .................................... CCGTTCTAAATCGTCCAATTTGTACCGATG 67613 36 100.0 30 .................................... AACTAGGCTTGATATTGGATGGTACACTAG 67679 36 100.0 30 .................................... TCTAAGGATCTCTTGTGTCCACGATAAGCT 67745 36 100.0 30 .................................... ACCACAACTTTACGTTCGTTGGACTACTCC 67811 36 100.0 30 .................................... AGACCCCTATCAGTTTGTATGATTGGAAGA 67877 36 100.0 30 .................................... GTTACCTTAGACAAGGAAACTAACAGAAAG 67943 36 100.0 30 .................................... TCTAAAGTATATTCTAAAATTAAAGGAGCT 68009 36 100.0 30 .................................... GAAGAGCAATACCACCGAAAACACTTGCCG 68075 36 100.0 30 .................................... TTTAGAGCTTGATCCATTTCAGTCAGCTGT 68141 36 100.0 30 .................................... CTAGGTGCTGTAATTGATAAAAGTGAACTA 68207 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 68280 36 75.0 30 ...C...A.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA GG [68286] 68348 36 97.2 30 ...................................T CGTTGTCAGCTGTAATCGTGATATTCGATT 68414 36 100.0 30 .................................... CGTATTATTATATTTATCGTTTGAAACACC 68480 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== ===================================== ================== 70 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATACTTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : TCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCCTGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //