Array 1 34370-30111 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEY01000039.1 Streptococcus ruminantium strain DTK377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 34369 36 100.0 29 .................................... TTGAAAGCCTACTGTCGCAGGGCATGGTC 34304 36 100.0 30 .................................... TCATCAGCAGCAGTATCACTGAAGACGAAC 34238 36 100.0 29 .................................... ACCGAAAAGGCAAGATGATTGACGGGGTG 34173 36 100.0 30 .................................... CCTTAATGAAAAACATGACTCAATCACGTT 34107 36 100.0 30 .................................... ATTCTGTCAAGCTCGCTTTTATTTCTACGC 34041 36 100.0 30 .................................... GCAGATATTCAAAATCAACCCGTGTCCGTT 33975 36 100.0 30 .................................... CAACACAAGGGAATATCTGGGGACATACAG 33909 36 100.0 30 .................................... CAGCTCGCTTTCTAATTGTTGAAAATCATC 33843 36 100.0 30 .................................... TGCTATCAACCGTTAACAGAAAATCTTTTA 33777 36 100.0 30 .................................... TGAATGATGTCGTAAATATCTTCAGCTTCT 33711 36 100.0 30 .................................... CAAATTTTGTCAAATGTTTTATAATAATCA 33645 36 100.0 30 .................................... TTTAGAGCTAGACATTCACCCTACAGAGTT 33579 36 100.0 30 .................................... CCACAATGTATTCTTTGCTAAAGTACAATA 33513 36 100.0 30 .................................... CTTTCTTTCCAGTCTCATTTGAAAGAAAAA 33447 36 100.0 29 .................................... TCGAATTTTCGCTTCTTCACTTCTAGCGT 33382 36 100.0 29 .................................... TCGAATTTTCGCTTCTTCACTTCTAGCGT 33317 36 100.0 30 .................................... TTGTGAACATTTTATCGATAAATTCATCAA 33251 36 100.0 30 .................................... ATTAAGCATCGTTCTTATACGAGCAACTTT 33185 36 100.0 30 .................................... TTAACTTCGCCGCCTTTGTTAGTACCGACT 33119 36 100.0 30 .................................... CTGGCGGGTACGTTGTAAACTATGTTATAC 33053 36 100.0 30 .................................... TTTCATACGTTCTCCTTCTACGTCACTTTA 32987 36 100.0 30 .................................... TGGCGCAGAGTACAGATAACTTAAAGAAAA 32921 36 100.0 30 .................................... TTAAGGTTGAAAGATTCCAAGAATTTATCT 32855 36 97.2 30 ...................................T CTGTGATATATATTTCATAAGCTTTCAATT 32789 36 100.0 30 .................................... GGATTTAGGCGAGCGTATGGTTATTGGTCG 32723 36 100.0 30 .................................... AAACATGCTGGGTATTGGTATGACTCGTTC 32657 36 100.0 29 .................................... CGGTCTATGGAACAACCATAGGATTCGTA 32592 36 100.0 30 .................................... AATCAATGCTGCTAAAAATTTAATAATTTC 32526 36 100.0 30 .................................... CTACCTCGAAACCTAATAAACACCAGTTGA 32460 36 100.0 30 .................................... AGGCCTTTCGGTACGCAAATTGGCAGGTTG 32394 36 100.0 30 .................................... AGGCTTTTCGGATTTGATTGATTAGGTCTG 32328 36 100.0 30 .................................... TTTAGAGCTTGATCCATTTCAGTCAGCTGT 32262 36 97.2 30 ........G........................... CTAGGAGCGGACTTGTGAACCGATTTTGTT 32196 36 100.0 30 .................................... AATCCGATTGAAAGCTGGTGATATTATCAA 32130 36 100.0 30 .................................... TATTTTTAACCAGCATCATCCTCCTCCTTT 32064 36 100.0 30 .................................... TAGCCGTCGCCAAGAACAAGCGTTCAGGCA 31998 36 100.0 30 .................................... CCGTCGCATTTCCACAGATGATGTACTCAT 31932 36 100.0 30 .................................... CAAGAACCTTCAAGGAATTTAACCACCCCT 31866 36 100.0 30 .................................... CATAATCGCTACAAGTTCCGAAGGGACTGC 31800 36 100.0 30 .................................... CCAATCAATAAACGCGGTTCCTATGATGCT 31734 36 100.0 30 .................................... CCAGCTTGGTATCCGTCCCCTCCCACTCTG 31668 36 100.0 30 .................................... GATTGATGTGAATAGTAGTGCTACCCAGCA 31602 36 100.0 29 .................................... CATGAATCAAATAATCTTTCATTGCTTGA 31537 36 100.0 30 .................................... CTCTATTACGACTATATGCTACCCAAGCAT 31471 36 100.0 30 .................................... TATTCACTGGGATAACGGAATTATCACATC 31405 36 100.0 29 .................................... TTTTATGTTAGTGGTAACCATAAAAGGTT 31340 36 100.0 30 .................................... CCAGCAGAAATAGCTCCACCAGATATTAAC 31274 36 100.0 30 .................................... AAAAATGACCAACTAGAAAGGCATGGTGTA 31208 36 100.0 30 .................................... CAAAGTTAAATAAATAGTTTAAAATTAAAT 31142 36 100.0 29 .................................... GAATTGGAAGAGCTATTTTTTGGAAGCTG 31077 36 100.0 30 .................................... CTGAGTATAAGACTACTAATCCTATCGTTA 31011 36 100.0 30 .................................... GTTCCGCCATCGTTAATGGGACGACCGATA 30945 36 100.0 30 .................................... TTATCGCATCTAAAGAAAAGCCAACTGATG 30879 36 100.0 30 .................................... GTCCTTGATATAGTCTCCCAAATCGACCAA 30813 36 100.0 30 .................................... GTTCGTGATTTGGTTGTGAAAACTGTATGA 30747 36 100.0 30 .................................... TCGATCCTCAACACTACCGCAATCAAAATG 30681 36 100.0 29 .................................... TAGCTCCAAATTCAAATCTTTGCATGTAC 30616 36 100.0 29 .................................... TCTTCCATGTGTAATTGAGAGCTTCACGG 30551 36 100.0 30 .................................... AAAAATCCGGAAATTGGTATCGTAGTGGCA 30485 36 100.0 30 .................................... ATTTTGGAGCTACTAAAGATTGGCTCCCTA 30419 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 30346 36 75.0 30 ...C...G.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA AG [30337] 30278 36 97.2 30 ...................................T CGTTGTCAGCTGTAATCGTGATATTCGATT 30212 36 100.0 30 .................................... GTCCAGTTTGTGTTAAAGTCACCTTTTCAT 30146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 65 36 99.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : AATTTTGCGGTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGTTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGCAATGTAAGATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //