Array 1 1-474 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSB01000026.1 Streptomyces diastaticus subsp. diastaticus strain JCM 4128 sequence026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1 37 100.0 36 ..................................... CCCCACGTGGGGCGCAGTCCCTTGTCCTCGGCAAGA 74 37 100.0 35 ..................................... TACACTTCGCAGACCGCCGACTGGGTGTCGATCTC 146 37 100.0 35 ..................................... GCCGCGTTGGCGGGCACCGGAGCGGTGACCTGGGT 218 37 97.3 36 ......................A.............. ATCTCCGCCTCGCGGCGGGCCCGGTACGCGTACTCG 291 37 97.3 37 ......................A.............. TACGAGGACATGGAGCAGGAGGACAACGACCTCGGCC 365 37 97.3 36 ......................A.............. GACAAGCTCTGCACCGAGCGCACCGGACGACCCGTC 438 37 83.8 0 ..............................GAAGGC. | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 96.5 36 GTGGCGGTCGTCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : | # Right flank : CATCACCAAGCGCGCCGTCGCCGTCTGGGAACAGCGGGAGGTGGCACGCCTGTGACTCACCCCGCGCCCGACCCGGCCGTGGTCGTCGAGGAACTCAAGGCGACCGTCGTCGCCCTCACGGCCCAACTCGGCGCCCTCGCCGGCGCTCCGCCAGCCCTTGCCCCCTCACCTCGCCCCGCCAGGGCGAGGCAGGGTAAGCAGGTTCGGTACCGCCAGCCGACCTCCGAGGAACTGGCCAAGCTGACCACCCTCTGAGAACAACCAGGCTTGTCTCAAAAGGAGACCGGGATCGCGGTCGGGGCGGACCCCCGCCTCATCGGGCGTTGGGCCAGGGACGCCGGCCTGCCGAAGCACAAGAGCATGACCTACGACGTGTTCGGCCAGCAGTTGACAGCCGCGGAGATCGCCAGGCACCCGAAGTGTGTCGTCACCGAGAGCACGCTGCGACACCGGTTGGCGGTCGGCCAGCCCGCCCATGCCGCGGCGACGACGCCCGCTAA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : GTGGCGGTCGTCCTCCGGGGCGACCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39088-38135 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSB01000027.1 Streptomyces diastaticus subsp. diastaticus strain JCM 4128 sequence027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 39087 28 100.0 33 ............................ CGAGCGCCAGGAGCACGAGCCACGACACACACC 39026 28 100.0 33 ............................ GACTGAGGGGGCTCAGGTTGAGCGCGACCATCC 38965 28 100.0 33 ............................ GGTTAGCCCCCGGCGGGACAGCAAAAAGCCCCC 38904 28 100.0 33 ............................ GCATCGTGGCGCGGGCGCCCTGGCCGCTGAGGT 38843 28 100.0 33 ............................ TGCTCGATCCGGGCCAGCGGCAGGCGCAGGGCT 38782 28 96.4 33 ......T..................... GCTCGGGACGATGCACGGTGCGATCTACGTGTG 38721 28 100.0 33 ............................ GTCGGGGCGGCGCGCGTCGGCCACCCACACCAC 38660 28 100.0 34 ............................ TGCACTGCGCGGCGAGGACACCTGGTTCCCCCCG 38598 28 100.0 33 ............................ CGAGCGCATCACCGGCGGTACCGCCTGGTACCA 38537 28 100.0 33 ............................ GTGACCGCCCGGCAAGTCACTACCTCGCCGGTC 38476 28 100.0 33 ............................ CCCGGCTGCGGTGCCGGCTCCTTCATCAGCCAG 38415 28 100.0 33 ............................ GGCCGCTGCGGTGGCGAGGAGTCCCAGCACTTC 38354 28 100.0 48 ............................ GAACGTGGCTCCGGATAACGTGGCTCCGGAGGTGGCGACGCCCAGGTC 38278 28 100.0 27 ............................ CTGCCGTTCTAAGCCCAAGCCCAGCTC 38223 28 100.0 33 ............................ GAACGGACTCCTCCAGCACCACGACCACGCGTC 38162 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 16 28 99.8 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AGGACGATGTGCACCGCTGCACTCACCGGGCGGCCGCCTGCGCCAGGCGCCGGTCCAGTTCCCCGTCCAGCTCCTGTTGTTCGGTGGTGCTCGGCGCGTAGCCGGTCCACCTCTCCAGCGCGGCCCGGGCCTGCTCCGCCCGCTCGGCGCGTTCCTCCGGCGTCAGCAGCGTCTCAGCCAGCCGGGACAGATAGGCCCGCAAGGACAGGCCCTCGGCGGCGGCGATGGTCGCCAGCCGCTCCTTGGCCGCCTCTGGGATGCGTACGTTCGCGTCGGACACGTCTACTCCTCCTCCAGGGGTACGGGTACGTACCCGTACCCTACGGGAGATCTTCTGCGTCTGTGGGCCCCGGCTCGTCCGTGACCGCCAGCCGCTGAGGTCGCGTACATCGCGCTCTCTGAAGACGATCCCCGCCATTCGCTGCCCGACGCACGAACGAGGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCGCCGCCGGCACCTGTCCCGGCCCTGTTCTCGTATAGCTACGGCCAACGGACATGTAGCGCTGCGTGACGCTCCGGTCCGGGTTCGCTGTGAAGGTCGGCGGTACAGCGGGATGACGGGTCGTCAGAGTGGTGCCGCAGTAAATGCCGGATTTACTGCGGTAGAGCCCCTACGGTGATCTTCACGACCTGCGGCGGACTACCCAGCGACCACAGGCGAGGTGTACGCATTTACTGCGGCAGTGCCGGAAGGGCGGGGCGGGCATGACGATCGAACCGGTGACCGAAATCGGGAGCGGGGGCGCGCTCCACCTGCCGCGCACCCGGGTCGTGCCCCTGTCCGCCCCGCCCGCCTCGTACACCGCGGCGGTCGAGCGGTACCTCACCGGCGCGGGCATCGCGAAGTCCTCGGCACGGATCTATCGGATCTCGCTGACGACGTGGGGGTGGATGCTCGCCGGCGAACCGGCGCCGACCGGACTTGCCCGCCGGGGCGCGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44117-43355 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSB01000027.1 Streptomyces diastaticus subsp. diastaticus strain JCM 4128 sequence027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 44116 29 96.6 32 ............................C TCGAGGAGTACGCCAACCGCATCTGACCCAAC 44055 29 96.6 33 ............................A TGAAGTTGCTCGCGGCGATCTCAAAAAGGGGAA 43993 29 96.6 32 ............................T TCATCAGCTCGTGCCTTGCGGTTGTCGTCCCA 43932 29 100.0 32 ............................. CTGGCCGTCCTGGTCCCGGTCGTGCTCGTCCT 43871 29 100.0 32 ............................. ATCGCGGGCATTTGAGTCCCTCTCGTCTTGGA 43810 29 96.6 32 ............................C TGGCCGACGCCCTCTACGGCGACCCCGCCAAG 43749 29 100.0 32 ............................. TTGACCAGGTCGGGGCACTCGGGCTCGGGCGC 43688 29 96.6 32 ............................C TCGTCTTCGGTGAGGATGCGGGGGCGCCGCTG 43627 29 100.0 32 ............................. GCACCTGACGGGCCGTGCACGGTCATTCGGTT 43566 29 89.7 36 ..T........................TC TCCACGGCATGTCTTCGGAGGGCTGTCAGACGCAAG 43501 29 100.0 32 ............................. AGGCCGGCCACGGTCCGATCGAGTGGACCGAG 43440 29 96.6 28 ............................C TACGCGGACGGCATCTCGGTGCCGTGCG 43383 29 89.7 0 .............C.............TC | ========== ====== ====== ====== ============================= ==================================== ================== 13 29 96.8 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : TCTCGGCCTCCCGCTGCTCGGCTGTCGCGATCGCCTTGTCGATCCGGGCCAGCCACATCGCGTGCCACGTCCGCAGCACGTGCAGGCGCGGCAGGTCGGCGGGCAGATCGGACATGTGTTCGAGTCTAGGTATGTTGGTGTCGGCGGCGTGCGCCACCCCCCTGCTTGACTTCGAAACGCCGCCTTCCTTCCCCTCTCCCATCAATCCGCCCGGCCTGGTACCGGGGCCGCATCGCCTGCATGGAAATCTCGCTCGCCACGGTCATCGCCCTGGCACTCTGCGGTCGGCGGGCCCACTGGGTACTGGGCGCGCGGCAGTTGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGGACGACGCATTCGGGCTGTCCGGCCGCGACCGCCCGGACCCCCGCCGCCCCTGGCCCGGCGCCCTCGCCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAACGAAAATGAGGCATCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : TCCACGGCCTGAACGCGATCGTCGAATCCGCCCTCGCCGACCCAGACGACTTCTGTGCGTTGTCGGAGGCGTACCGCCGCTCCCGGTACCGGATCGAGGTCGTCGCGTCGCGACGCCCGAGGTGTTAAGCCAGCTGGGTATCATCGATCGCTTCCTCACCGAGGCCTCCGTCGGCGCGGGCGGACGGTTCGTGACCTGGGCGAACCACGACTCATGCGCGAAGGACATGCTCACGACGCTCGCCGTCATCGAGGCCGAGTAGCTCGCCGACGGCGTCACCGTGGTGTCCCGCGACGGCACGGTGCTGGACGACAACGAGCTCGTCGACGGCGCGTGGCGGCGCCGGCCCGCTGCCGACAAGGCGGTCGCCCGAGGCCGCTCGCGCACCTGGACGGCCCGGGAGACAGCCGTGTTCCAGCAGGAGATAGCCCGTGCCGAGGTGGGCGTGCACCGCGACGTGCCGAGCGAGGACGAGCGCCTGGCCGTCGTAATCGACGGAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47008-45272 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSB01000027.1 Streptomyces diastaticus subsp. diastaticus strain JCM 4128 sequence027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47007 28 100.0 33 ............................ CTCCTGATCCCTCAGCATCCGCGTGTACGCCCC 46946 28 100.0 33 ............................ CGCGAGGCCCTCGGCCGCGGCGGTGATGGCCAT 46885 28 100.0 33 ............................ GCCCCTGCCAGACAGGGGCCTGGCAGGGGCAGG 46824 28 100.0 33 ............................ CCGACGGTCGAGGAGCTGAGGCCGAGGCCGCCC 46763 28 100.0 33 ............................ GGCCAGACCGGTCAGGGTCACGATCACGAGCCC 46702 28 100.0 33 ............................ GGACGGGGGGCTGTCGCTGCCCGCCGCCGACGC 46641 28 100.0 33 ............................ CCGGGGGCCACTCATCGGCCGACAGGCCGTAGG 46580 28 100.0 33 ............................ CCCCAGCTCGCGACTCTCCCCGTACTTCCGCCG 46519 28 100.0 33 ............................ GTCGCCCGATACTCGCGGGTTGCGCGCGAAATG 46458 28 100.0 33 ............................ CCCTGGTAGAGGAGGAAGGGCCAGACGCACTCA 46397 28 100.0 33 ............................ CTGATCGATATCCATGGCGGGGGAGAAGTTCAA 46336 28 100.0 33 ............................ CCGGTACGGGATCGGCTCGGCGTGGCGGCCGGA 46275 28 100.0 33 ............................ TCGGCCGCCGGATTTTTTGGGGGGTCGGGTGTG 46214 28 100.0 33 ............................ CGCTCCGCCGCCTCGGCCCACGCGGCCGGAGCC 46153 28 100.0 33 ............................ CACGAAGACCCCGGCCGCGAACACTCCCGCGAA 46092 28 100.0 33 ............................ CAGGTGGACCAGCACGCCAAGGTCCTCCGGCTG 46031 28 100.0 33 ............................ GAGGACGCGGCACCCGAAGAGCTGGTCCTCATC 45970 28 96.4 33 ......T..................... CTGTCCGAGGCGCGCCAGATGGTGCTGCGCTAC 45909 28 100.0 33 ............................ GCCCCACGGACCAGCGGTCGCGGCCTCGGCGCG 45848 28 100.0 33 ............................ GCCCTCGGATACCTCGTCGCCGCCCCGCCGGCG 45787 28 100.0 33 ............................ CGTGGCGCACGCCCGCGCCCTGGCCCTCCTCGA 45726 28 96.4 33 .C.......................... TCTGTTCCCCTCGGTAGGGGATCAGGGCGGGGA 45665 28 100.0 33 ............................ GCCCCGGAGGTGAGAGTCCGGGGCCTGTCGCTC 45604 28 100.0 33 ............................ GCCTTTGCCGACGCCGACACCTCTCTCCGGCTC 45543 28 100.0 33 ............................ CCGGCGCGCCGCCCTCCCCGCGTGATCACCACG 45482 28 100.0 33 ............................ CGCGGCGGAGTGGCCGGCGGGGCGTCCCGCGGC 45421 28 100.0 33 ............................ GGTGGCCGGGTCCGTCGACTACGGCCTCTCCAT 45360 28 100.0 33 ............................ TTCCGAGGAGGGGCACGCCGTGGCGCAACAGGT 45299 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCGGGCGTTGCCTTACCAAGGTCGTGGACAGCGCAAAGCCACGCAAACAACCTGCGGCCCCGCCCCGGACCACCGGCCACCTCATCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCAGCCACAGCCCCGGTATCAAGCAGATGCGACAGAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGTGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATCAGGCACTCTCGTGGTGACCTCCCAGGTCAGCAAGT # Right flank : CCCGGCCGCCGCCGGCGAGAATCACCTCGCCATGTCGGCCCCCGGGCGCCTCCTCGGCATCCGTACGCCCCCTACCGCCCCAGCCCGGCCCGACGCACCATGGCTCTCCCGGCGCAGCGCTGGACCAAGGGGAGGGGCGGCAATGAACGTCCGTCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGCGGGTGTGCAGTCAGACGTGCGGCTGGTCATGCGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTCACCGTATGAGTAGGCCGCCAGAGATCACCCGCACCGAGTGCCGGCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGCGGCTGGGTCAACCCCTGGTACGAGGGGCACGGCGAGCTGCCCACTGCCAAGGACGACCCTGACTACCCGCGTCGTAGAAACGCCCGCTGAGTTACAGCAGGCCGAGGTCCGTGTCCGGTCGGCACATGCTGCACGCCTCCACGTCGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 57330-59126 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSB01000027.1 Streptomyces diastaticus subsp. diastaticus strain JCM 4128 sequence027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57330 29 96.6 32 ............................G CTCTCCCGGCCGTGGGTCTCCGCCCGGCTCAA 57391 29 96.6 32 ............................G CAAGGTCCGGGCCCCTTTTCTTGCTCTCGGAG 57452 29 100.0 32 ............................. ACCAGCCCAGATCTGTGCTGAGATCACATCAG 57513 29 96.6 32 ............................G CGAAAGGCCCCCGCCGAATTCGACGGGGGCCT 57574 29 96.6 32 ............................G CCGCGGGCGCCCGGGGGCTTGCCCCCACCGGC 57635 29 100.0 32 ............................. TGCCTGGTGCGGCCGGGGCTGGCGTACCGGTC 57696 29 100.0 32 ............................. GCGCAGATCAGCGCCACACAGGCCACAGAGCT 57757 29 100.0 32 ............................. TCGGCGGCGGTACGGATGAGGGGAAGGGTCGT 57818 29 100.0 32 ............................. TGGGGAGCCCCTGTGATGATGAAGCTCTATTC 57879 29 100.0 32 ............................. CCCTACCGGCTGATCCCCGACTCCGACCCGTC 57940 29 100.0 32 ............................. TGGTGAGCCACCGCCACCGTGCCCACGCTGCC 58001 29 96.6 32 ............................T CCAGGACATCGCCGATGAGGGCCTGGTCCATG 58062 29 96.6 32 ..................A.......... CCCCAGGGCACGTCCGCGGCCCCCACCACACC 58123 29 96.6 32 ............................T CCGATCAGGGCGGCCCCGCCAACGATGATCTT 58184 29 96.6 32 ............................G GCCGTCAGTCGGCCGTCTGGGGGGTGCCCACC 58245 29 100.0 32 ............................. GCATGGGAACGTTCATCACGTCGCAACAAGCG 58306 29 100.0 32 ............................. GGCGAGAGCCCCGGGGGAGTGGAGTTCCCCGG 58367 29 93.1 32 ............T...............T GGCCACCGAAGAAGAGCTGCGCCGCGCCGCCG 58428 29 96.6 32 ............................G CGGGTCCCCGGCGCGGGCAACGACACCGGCGG 58489 29 100.0 32 ............................. AGTGCCCGCGCGGCCTGCGGGTGGCGGTGGAG 58550 29 96.6 32 ............................G TGATGGAGGGACTCAAGGGCGCGCTCTTCAGG 58611 29 96.6 32 ............................G GCTGAGGGGGAGTGGCTGCGGCAGGTCAAGTC 58672 29 96.6 32 ............................G TGGCAGCGCGCCGCCTCGGCCGCGTTCACCGT 58733 29 96.6 32 ............................G CGGGAGGGGTTGACCCTGGCGCGGCCGGGCGT 58794 28 96.6 32 .....................-....... ACCCCGGCCCGCCGCCAGACCGCTGTTGCTCA 58854 29 100.0 32 ............................. TGGGACCCGCGGGACGGCAAGGCCGACCTGGA 58915 29 100.0 32 ............................. CAACTCGTCCGGGGACGCCGTCGTCACCTGGT 58976 29 96.6 32 ............................T CCGTGCCATGCCTGCCACACGGCCTGCACGCG 59037 29 96.6 32 ............................T CGGCTCGGCAGGCGTCGTCCTGGAGAGCTTCT 59098 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.0 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCC # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCGCCAGCTGCACTCGGAGAACAGCACATCGCCATCGTCGGACCAGAACTCAAAGACCAAGCCCCGCTCCCGGGACAACAGCCATGACCGTCATCATCTTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAATGCTGGAGTCTTCGTCGGCAACCCCAGCCGACGAATCCGCGACCGTCTCTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCTCCACCAACGAACAACGCTGGGCCGTCCGTACTGCCGGCCGTAACCGCTGGCGGCCCGTCGACTATGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGAAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : CTTTCCCTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCGGCGGTCGCCCTCCGGGATGGCCGAGGATCGCAACCGCCCGGGAGGGGAACCCCGGGCCTGGGGATCAGTCGTCGGGCGTGGCAGGACCAGCAGGTCCACTCTCCTGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCAGTAACAACTTGGGGTGCTCGGGCGGGCGACTGCCCGAAAGTCGATCAAATGCGGCTGAATCATCAGGCTTGCCGAGCAGTCAGAGGTCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGAGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACGACAAGAGGCTGGCCACGAGGCCG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1183-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSB01000024.1 Streptomyces diastaticus subsp. diastaticus strain JCM 4128 sequence024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1182 37 100.0 36 ..................................... GACGCTGAGGCGGACCGCCGGACCAAGCTCCGCACG 1109 37 100.0 37 ..................................... CACTCCGCCTCGAAGGCGTCGAGGTCGGCGTCCGCCG 1035 37 100.0 37 ..................................... GCCAGCGCCTCGTTGCGGCGCTCGGACACCCACGCGA 961 37 100.0 36 ..................................... GTCGTCGGCGACAACCCCGAGGCCGCCAACCAGAAG 888 37 100.0 37 ..................................... GCGCTACCTGCCTCGGCGCCGGCTCCACGGCACGAAG 814 37 100.0 39 ..................................... GTCACGGTCGTCACCACCCGAGACTCAGAGCCGCTGGGT 738 37 100.0 37 ..................................... GTGCGCTACGTGCGGATCAGCCTGTGGGCGGCCCGGC 664 37 100.0 35 ..................................... ACTTCGGTCAAGCGGCTCTCGGCCTGCGGACGGGT 592 37 100.0 36 ..................................... TGCACGTGCGCAACCCAACCGCACGCCGCCGCCACG 519 37 100.0 36 ..................................... CGCTCGGCGAGCGGCTGCTGATCGCGGGCCGGTCCG 446 37 100.0 37 ..................................... AGCGCTGGGCGGGCGAAGTCCACCGTAGCGACCGGCT 372 37 100.0 36 ..................................... TTCGGGGCGAGCAGCCCTTGAAGGGCGTCCATCAGC 299 37 100.0 37 ..................................... CTCTGTGCAGAGCGTACGAGACGGCGACCCCTCCGGT 225 37 100.0 36 ..................................... GCCGTTCGTGTCGGATGCCGCCTCCATGACCTGCGG 152 37 100.0 38 ..................................... CCGTACGTACCCAGGATGGTGTTGGCCCGGTTCCACGG 77 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 37 GTGGCGGTCGTCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : ACGCATCCTGGCCCGACACCTCCGAGGAGACCTCCCCGCCTACCTGCCCTGGGCCGCAGCCTGATGGAACTCCTCCTCACCTACGACGTCGACACCACCACGCCCGAAGGCCGCCGCAGACTCCGCCGCGTAGCCAAGCTCTGCGAGGGACACGGCATCCGCGTGCAAAAATCCGTCTTCGAGATCATCACGGACGACCAAACCCTGCTGCAGCTCACATACGACATCGAGGACCTGATCAACACCGAAACCGACAGTGTACGGATCTACCGACTGCCCCCCTCAGGCACAGAAACCGTCCAAACTCTCGGAGCGGCAGCACCTCACCCACATCGCAGCGACCTGATCCTGTAGGCGACGGCACGCTCCGCTTCGGAACCTCAAGCACACACGCGACACGCCCATCACACCTAAGGAGAATGCCGGATATGTGCGCTAATGGGCATTCTTCAGCTGGCTCTCGTGAGTACTCAGATGGCCAAAACCCCTGACCAACCAGG # Right flank : CGTCGGGGCCGCCGTGGTCCCAGTCGTCGTGCCGTGTGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9552-11799 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSB01000024.1 Streptomyces diastaticus subsp. diastaticus strain JCM 4128 sequence024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 9552 37 100.0 37 ..................................... CTCCCAAGGTGATCGTGGATGAGGGCCGGAACTTACC 9626 37 100.0 38 ..................................... TCGGTGTCGAGGCGTGCGTACACCCGCTGCACCTGCGA 9701 37 100.0 37 ..................................... ACCGTGAGTCCCCTGGTGGCCGCCTCGACCCCCGAGG 9775 37 100.0 36 ..................................... GAGATGACCCGGGGCCTCGCCCGGCACACCGACCTG 9848 37 100.0 37 ..................................... CACACCTCCTGTCCGACCTCGGTCCGCTCGGGGTGGT 9922 37 100.0 38 ..................................... TCGCCCCCCTCGCCACCCCGCGGCTCTACCGCGCGATG 9997 37 100.0 38 ..................................... CCTCCGGTCGGGCGGCCCTCACGGTTTTGCCGTGCGGG 10072 37 100.0 36 ..................................... GGCGATGTACTTGCCCATGGACACCCCCGCAGCCTT 10145 37 100.0 38 ..................................... TCCGTGACCGGCTTGCCCTTGGTGGTCCAGTCCACGAC 10220 37 100.0 37 ..................................... CCCACTTGTCGCCGGGCATCGTCATGCCGTGAAAGGG 10294 37 100.0 36 ..................................... ATCCGCTCCTCGACCATGTACAGCGTCGCCGCCCAT 10367 37 100.0 36 ..................................... CCCGTCGCCGTTTACTCGGTGATGTTGAGCGTGATC 10440 37 100.0 38 ..................................... GCCGCCGCGCCGCCGCAAGGGCGACACCCCCCGGTACA 10515 37 100.0 37 ..................................... CGGGGGGTTGGTGGTCGAGGTCAGCGGCGGCGGTGCT G [10542] 10590 37 100.0 38 ..................................... TTCTCGACGATGGAGCAGTGGCGGAGGAAGTCGACGGC 10665 37 100.0 36 ..................................... TGCGTCAGCTCGGCGGCCAGGTCGTCATCGAGCGCC 10738 37 100.0 36 ..................................... TCGGTCTTCACCGTGACCCCCCTGGTCGAGCGCTCG 10811 37 97.3 36 .............................A....... GGCGTCACCACCGCAGGACGTCGAGACCTGCGCGGC 10884 37 97.3 36 ..............C...................... CACGGTTCGGTGGGGGCATCGCGGATCAGGCGCACG 10957 36 94.6 37 ....................-........A....... ATCGGCAGCGTGACCAGCGGAGAACTGCGCGAGCCGG 11030 37 91.9 39 ..............C..A...........A....... TCCATCGTCCTCTGGAGGCTGGCCAGCCCCAGGTGGACG 11106 37 94.6 35 ..................A..........A....... TTCCATGCCGACGGCGCACGGACGTGCTGCTCGTG 11178 37 94.6 36 ..............C..............A....... ATTCTCCACGTGCCGGTCCAGTTCGTCAGGCGCGAG 11251 37 89.2 36 ..............C..A....A......A....... CAGAGCACGTGGCGCGGCATCACCATGCCCAACGAT 11324 37 94.6 37 ..............C..............A....... TCCGGGTGCCCGCTGAGCGCCTGCGCACTGACGAGCG 11398 37 97.3 36 .............................A....... CAGCAGGAGTACGAGGGCGAGCTCAACGCCCACCGG 11471 37 91.9 37 ..........T...C..............A....... TGGCCGGTCCAACGGGATCAGCCCGCAGGCCGTCGCC 11545 37 97.3 36 .............................A....... TCCTCTGTCGTGGGGCGCCCCGCGCACTACGGCGTG 11618 37 94.6 36 ..............C..............A....... CTCATCGCGGGCGGCACCGGCTCCGGTAAGGGAGAG 11691 37 86.5 35 .............CC...A..........A..C.... CACATCTCCTGGCGCAGGAGCAGATGCAGGTCGAG 11763 37 89.2 0 ............A.C......A.......A....... | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 97.1 37 GTGGCGGTCGCCCTTCGGGGCGGCCGAGGGTCGCAAC # Left flank : CCGCCACCCGAGCCGCCAGCACCGTCCCCGCCTCCTTGTGCGGCACCCCCACCCGGCCACCCGAGCCCTCAACCACCCCCAACCGCTCCTGCCAGGCACAACACCCCTTCCCCACGTCATGCACCAACCCCAGAAACTCCGCCGCCTCCCCAGCCCCGAACACCTCACCGAACCCCCGCGCCAGAGCAGCCGAACCCCTCAGGTGATCCACCAGCAGATGCCGCACACCCCACGGATTCTGGCTGTGCGCGAACAACTCACGACCCGACATCCCGGCCCCCTCACCGATCGACCACCCACCGAAGGCAGCCACCGTAAAGTGGGCCACCGACACCACAACCCAGACCACATCGAAGCGACCAGCCAGGCTGCTTCGGAACCTGAAGCGCACACACGACACGCCAATCACACCTAAGGAAAATGTCAGATTTGCTCGCAATTGGGCCTTGCTTAACTGGTGGTCGAGAGCACGCAGACAGACAAACCCCTGGCCAACCAGG # Right flank : CCTCGGCGGCCGCCAGGACGCGAAGCCCCCGCGCGGGGTCGCGGTCGCCCTGCATCGACGCGGCCTCGCTCGCCCCTCAGCTCGTCCTCGCCGGGCACCCGGTCACCGACGTGGCTGCCCTGCTTCGCGACCACGCCGCGACCGCCACCAGCCCCGCCACCACCACGGCGTACCTGGCGGCGCTCACCGGGCACTGGCACCGCAACGCCCGGCGGCCGGCGGCTGCCGGCGCCCCTGGCCTGCGGACCTACCAGCACCGTGCCGCCGCAGCAGGTCTCGCCCTCCTCATGACCCGCCTCTGACCACCGTCTCCGTGAACTCGCTCTCGGCGTGACCGGGTTCAGCCGAGATGGCGGCGAGGCGAGGAGGTACTTGCCTCGCCTCGCCCGCGAAGGGGAACCAGCGCGCTCGTCGGAGGGCTCCGCTGGTCGAACCTTGTACGCCGCCTGACAGCGTCCGGCGGGCGGCACGCAGCCACCGCCGGGCCCTCGCCCGCGCCG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGGCGGCCGAGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //