Array 1 613250-611586 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKR01000020.1 Salmonella enterica subsp. enterica serovar Heidelberg strain UG1286CA SRR2088774.ctg000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 613249 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 613188 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 613127 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 613066 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 612999 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 612938 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 612877 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 612816 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 612755 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 612694 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 612633 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 612572 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 612511 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 612450 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 612389 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 612328 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 612267 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 612206 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 612145 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 612042 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 611981 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 611920 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 611859 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 611798 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 611737 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 611676 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 611615 29 96.6 0 A............................ | A [611588] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 630329-629508 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKR01000020.1 Salmonella enterica subsp. enterica serovar Heidelberg strain UG1286CA SRR2088774.ctg000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 630328 29 100.0 32 ............................. TTCCAGAGCCGTTTGACTTACTGTGGCCATTA 630267 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 630206 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 630145 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 630084 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 630023 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 629962 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 629901 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 629840 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 629779 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 629718 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 629657 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 629596 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 629535 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGTCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //