Array 1 98053-100523 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIQ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2390 NODE_3_length_358731_cov_84.0603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98053 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98114 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98175 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98236 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98297 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98358 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98419 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98480 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98541 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98602 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98663 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98724 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98785 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98846 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98907 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98968 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99029 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99090 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99151 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99212 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99273 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99334 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99395 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99456 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99517 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99579 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99640 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99701 29 100.0 33 ............................. TTTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99763 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99824 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99885 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99946 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 100008 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 100069 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 100130 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 100191 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 100252 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 100313 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 100374 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100435 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100496 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116656-117460 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIQ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2390 NODE_3_length_358731_cov_84.0603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116656 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116717 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116778 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116839 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116900 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116962 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 117023 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [117065] 117065 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117126 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117187 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117248 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117309 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117370 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117431 29 96.6 0 A............................ | A [117457] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //