Array 1 29886-28924 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB206037.1 Riemerella anatipestifer RA-SG Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 29885 38 94.7 39 A..A.................................. GTTCGCAACACATAGGAAGTATCGGAAAACTTTTAATAA 29808 38 100.0 39 ...................................... ATTCGCAACTATCTGCACAGGAGAAAATAGAGTCAATCA 29731 38 100.0 39 ...................................... ATTCGCAACGTCCGTTGTCGGTTCATCTGATACTATATC 29654 38 100.0 39 ...................................... ATTCGCAACAAATCAAGTGTTTTTAAACACTTCGATAGA 29577 38 100.0 39 ...................................... ATTCGCAACGTTTGTATCTGGATATTATAATCTCCATTA 29500 38 100.0 39 ...................................... ATTCGCAACTGGGATTTGACAAAACCTTACCTCAAAGAC 29423 38 100.0 39 ...................................... ATTCGCAACATTTTACACGAAGATAAAGAGATGTATCTA 29346 38 97.4 39 ......................T............... GTTCGCAACAACATTGCAATAAAACTAATAAACGAAGTA 29269 38 97.4 39 ......................T............... GTTCGCAACATAGACGAGATTGAGATATGACAACACCTC 29192 38 97.4 39 ......................T............... GTTCGCAACGATTTTCAGCTAATTAAATTATTTAATAAA 29115 38 97.4 39 ......................T............... GTTCGCAACGACAAAATAAAACAGATGTGCGATGGGATA 29038 38 97.4 39 ......................T............... GTTCGCAACAACTACTTTCTAAAGCATTACAATTAAGAA 28961 38 97.4 0 ......................T............... | ========== ====== ====== ====== ====================================== ======================================= ================== 13 38 98.4 39 GTTGTGAATTGCTTTCAATTTTCACTATCTTTGTGATA # Left flank : ACGAAATATACACCTGGCGGAGTTGTAAATAAAACCGACCTAATAGATATTACTTCTAAGTTTACTCTTTCAAAAGAAAATACTAATGGCTATGCTGCCGATTGGGTAGATAGTGGCGAATTTGCAATTCCTGCTACAGGAAAAGGTTATATCTTTTTTGAATATGCAGGTAACACTACTGTAACTACTACTGTACAAATAGACAATATTACTTTAAAGTAGACTGAATATCTCAATTTAAAAACGTAGAGCTACCTCTTGGAGGTAGCTCTTTTTTTATCTTTGTAACAGCTTGCAATTTATAAAAATGAAAAACTCTATGCTATATTTTATACTTATTGTATTTTCTATTTTTTATATCATTTATAATTCCTACTACATTGTAATGGATTTTGGGAGTATAGGGATTTTTAATTTAGTATCTAATTTAATTGTGTCGGTTTACATAATTGGAAGCGTGTTTTATATCTTAAAAAATAAAACCAATAACAAACAGTAAT # Right flank : GTTCGCAACCTCAAAAAATAAACCCATTGTTTTTCAATGGGTTTTGCGTTTTTATAGGATTAGATTTTTTACTATTTCTTCTCTATTTTTGTTTGATGTAAAGTCTTTTTCTATTCCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTTGGTTCCTCTTTAGCTCTCGCAAAGAAAATTTCAATATCTCCAAACTGTTTATCTGTAATGCTCATTATAGCTACCTTGCCATGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCCGCATTTTCTCGACTAGGACAATGCCGTATATAAATGGAAAATTGGAAAAGACTAAACCCATCATCTTCCAAGCGTTTTCTAAAAAGTTGAGCTGCTTTTCTCATCGCTTTGGTTTCTGTTGGTAAATCATATAACACCATAACCCACATAACTCTATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATATTTGTCTTTTTTCTCCAGTATAACATT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAATTTTCACTATCTTTGTGATA # Alternate repeat : GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTCACTATCTTTGTGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.91,5.14 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 12375-14273 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB206042.1 Riemerella anatipestifer RA-SG Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 12375 36 91.7 30 .................G.....TG........... ACTAGTAAAATAATAACGATATGAGAAATT 12441 35 83.3 80 ................-.....CT....T..A...A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT T [12466] 12557 35 83.3 79 .......G........-.....TT....T...G... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC C,A [12582,12589] 12673 35 83.3 79 ................-.....TA..T.T...G... TCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG CT,A [12695,12706] 12790 35 83.3 82 .......G........-.....TT....T...G... TCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT C,A [12815,12822] 12909 35 83.3 81 .....T..........-.....CT....T...G... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA C,A [12934,12941] 13027 35 86.1 81 ................-.....TT....T...G... TCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA T,A [13052,13059] 13145 35 83.3 80 .......G........-.....TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC C,A [13170,13177] 13262 35 86.1 80 ................-.....CT....T...G... TCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT T,A [13287,13294] 13379 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 13445 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 13511 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 13577 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 13643 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 13709 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 13775 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 13841 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 13907 36 100.0 30 .................................... TAAGAACTTTGTAGATGAAAGTGGTAATCT 13973 36 97.2 30 ...................C................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 14039 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 14105 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 14171 36 100.0 31 .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 14238 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 23 36 93.0 48 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CATTAAAATAGATGGGGACAACCCTAAAAACGGTATTGTCTTTAAAAACTTAGACACTCAGCAAGAAGTGAAACTCTCAGCAGAGCATATTGTCCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCGGGTAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGAACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAATGCTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGACACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGCCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATAAATAGGAAGCAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTATGCCCTTAGGT # Right flank : CTTAGGAGCAAATAAGCTGTATTTATTGGTGTTGTGAATACCCTTCAAATGCTGTGCATTATTGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGT # Questionable array : NO Score: 4.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-1.22, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [58-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //